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following contributors:
10 years, 7 months ago
The city by the bay
A: Limma contrast matrix question/concern
10 years, 7 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
10 years, 7 months ago
WEHI, Melbourne, Australia
A: how to explain the figure obtained from edgeR?
10 years, 7 months ago
WEHI, Melbourne, Australia
Removing continuous covariate effects in limma analysis
10 years, 7 months ago
WEHI, Melbourne, Australia
Confidence intervals on edgeR logFC
10 years, 7 months ago
United States
What is the best way to get help on Bioconductor packages?
10 years, 7 months ago
Australia/Melbourne
A: Rsubread::featureCounts extremely slow on some annotations
10 years, 7 months ago
United States
Use R/Bioconductor to match BLAST hits to GO terms?
10 years, 7 months ago
United States
Use R/Bioconductor to match BLAST hits to GO terms?
10 years, 7 months ago
Icahn School of Medicine at Mount Sinai…
A: edgeR (3.10.2) contrast question for experimental factors combined as a group
10 years, 7 months ago
Icahn School of Medicine at Mount Sinai…
edgeR (3.10.2) contrast question for experimental factors combined as a group
10 years, 7 months ago
United States
Use R/Bioconductor to match BLAST hits to GO terms?
10 years, 7 months ago
United States
A: Design and independent filtering of patient RNA-seq data
10 years, 7 months ago
The city by the bay
A: Design and contrast question limma (additive or nested or duplicateCorrelation()
10 years, 7 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
10 years, 7 months ago
WEHI, Melbourne, Australia
Confidence intervals on edgeR logFC
10 years, 7 months ago
WEHI, Melbourne, Australia
A: NaN results on some pathways in CAMERA
10 years, 7 months ago
United States
BiocCheck: REQUIRED: vignette sources in vignettes/ directory (for custom vignettebuilder)
10 years, 7 months ago
United States
BiocCheck: REQUIRED: vignette sources in vignettes/ directory (for custom vignettebuilder)
10 years, 7 months ago
United States
A: RCytoscape using Cytoscape v3 REST interface?
10 years, 7 months ago
Switzerland
Gviz - show plus and minus strand from a bam
10 years, 7 months ago
United States
Use R/Bioconductor to match BLAST hits to GO terms?
10 years, 7 months ago
United States
A: Agilent microarray chip normalization/background correction
10 years, 7 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
10 years, 7 months ago
WEHI, Melbourne, Australia
Confidence intervals on edgeR logFC
10 years, 7 months ago
Seattle, WA, United States
Algorithm description for matchPWM (Biostrings)
10 years, 8 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
10 years, 8 months ago
The city by the bay
A: Correct construction of design matrix in limma for multiple contrasts for gene e
10 years, 8 months ago
United States
DESEq2 comparison with mulitple cell types under 2 conditions
10 years, 8 months ago
Switzerland
Gviz highlighted regions displaying behind main plot
10 years, 8 months ago
United States
A: [DESeq2] Cook's distance flagging for continuous variables
10 years, 8 months ago
Cambridge, UK
A: DiffBind : How is computed the correlation reported when using dba()
10 years, 8 months ago
WEHI, Melbourne, Australia
Confidence intervals on edgeR logFC
10 years, 8 months ago
WEHI, Melbourne, Australia
Confidence intervals on edgeR logFC
10 years, 8 months ago
WEHI, Melbourne, Australia
A: ChIPseq-style peak calling for paired-end sequencing?
10 years, 8 months ago
United States
BiocCheck: REQUIRED: vignette sources in vignettes/ directory (for custom vignettebuilder)
10 years, 8 months ago
WEHI, Melbourne, Australia
A: edgeR: annotation and isoform analysis alternatives
10 years, 8 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
10 years, 8 months ago
The city by the bay
A: edgeR: glmLRT equivalence between tests with cell means model and factor levels
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