News:OrgDb and TxDb packages have been added to AnnotationHub for Bioc 3.6
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shepherl 3.1k
@lshep
Last seen 5 days ago
United States

Hello all,

The complete set of OrgDb packages have been added to AnnotationHub as well as the newly added TxDb. They will be immediatly available following the release and using the release Bioc 3.6.

The following example:

> library(AnnotationHub)

> hub = AnnotationHub()

updating metadata: retrieving 1 resource

|======================================================================|

100%
snapshotDate(): 2017-10-27

> query(hub, "OrgDb")
AnnotationHub with 1019 records

> table(mcols(query(hub, "OrgDb"))$rdatadateadded)

2017-10-23 2017-10-27 
        19       1000 


> query(hub, "TxDb")
AnnotationHub with 45 records

> table(mcols(query(hub, "TxDb"))$rdatadateadded)

2016-12-22 2017-04-11 2017-04-13 2017-10-24 
        29          1          5         10

Cheers, Lori

orgdb txdb bioconductor annotation annotationhub News • 758 views
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