News: OrgDb and TxDb packages have been added to AnnotationHub for Bioc 3.6
0
gravatar for shepherl
18 months ago by
shepherl ♦♦ 1.3k
United States
shepherl ♦♦ 1.3k wrote:

Hello all,

The complete set of OrgDb packages have been added to AnnotationHub as well as the newly added TxDb. They will be immediatly available following the release and using the release Bioc 3.6.

The following example:

> library(AnnotationHub)

> hub = AnnotationHub()

updating metadata: retrieving 1 resource

|======================================================================|

100%
snapshotDate(): 2017-10-27

> query(hub, "OrgDb")
AnnotationHub with 1019 records

> table(mcols(query(hub, "OrgDb"))$rdatadateadded)

2017-10-23 2017-10-27 
        19       1000 


> query(hub, "TxDb")
AnnotationHub with 45 records

> table(mcols(query(hub, "TxDb"))$rdatadateadded)

2016-12-22 2017-04-11 2017-04-13 2017-10-24 
        29          1          5         10

Cheers, Lori

ADD COMMENTlink written 18 months ago by shepherl ♦♦ 1.3k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 375 users visited in the last hour