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News: OrgDb and TxDb packages have been added to AnnotationHub for Bioc 3.6
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gravatar for shepherl
3 months ago by
shepherl ♦♦ 530
shepherl ♦♦ 530 wrote:

Hello all,

The complete set of OrgDb packages have been added to AnnotationHub as well as the newly added TxDb. They will be immediatly available following the release and using the release Bioc 3.6.

The following example:

> library(AnnotationHub)

> hub = AnnotationHub()

updating metadata: retrieving 1 resource

|======================================================================|

100%
snapshotDate(): 2017-10-27

> query(hub, "OrgDb")
AnnotationHub with 1019 records

> table(mcols(query(hub, "OrgDb"))$rdatadateadded)

2017-10-23 2017-10-27 
        19       1000 


> query(hub, "TxDb")
AnnotationHub with 45 records

> table(mcols(query(hub, "TxDb"))$rdatadateadded)

2016-12-22 2017-04-11 2017-04-13 2017-10-24 
        29          1          5         10

Cheers, Lori

ADD COMMENTlink written 3 months ago by shepherl ♦♦ 530
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