I am new to this forum so I'm apologizing in advance if I am not posting in the most formal way.
I am using the goseq package from bioconductor in order to perform enrichment for markers that are differentially methylated (limma output). These markers have been measured according to CpG arrays from 450K illumina (i.e. cg07790169) and I am retrieving them on ucsc website. I am a newbie at using the goseq library, so I do not know it in details. But my understanding is that it uses codes from Ensembl (i.e. ENSG00....) and not gene codes from UCSC.
Therefore, I would like to know whether there is a package that would allow to link in a very straightforward way a methylation marker (i.e. cg07790169) to an Ensembl gene code (i.e. ENSG00...) so that I could properly run goseq.
I could do it by copy and paste, but it would be extremely time consuming (I have several hundred methylation markers).
Thank you for your kind help and understanding