Question: ChIPQC gives Bam file has 297 contigs Error: subscript contains out-of-bounds indices
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3 months ago by
star0
star0 wrote:

I like to use ChIPqc packages, so I used output of Bowtie2 (after deduplicating using Picards) as Bam file and used narrowPeak file as output of MACS2, but I faced with below Error.

sample = ChIPQCsample("align-path/undup_uniqu_SRR5339509_ENCSR890NXD_control_2.bam", peaks="peak path/GSM2534593_SRR5339509_H3K4me1_narrow_peaks.narrowPeak")

Bam file has 297 contigs
Error: subscript contains out-of-bounds indices
chipqc qc chip-seq • 73 views
ADD COMMENTlink modified 3 months ago • written 3 months ago by star0
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