3
votes
4
replies
315
views
0
votes
2
replies
253
views
1
vote
2
replies
323
views
0
votes
5
replies
584
views
updated 7 months ago by
etiennedanis
•
0
•
written 8 months ago by
Bogdan
▴
660
0
votes
1
reply
325
views
updated 11 months ago by
Guillaume Devailly
▴
60
•
written 11 months ago by
Bogdan
▴
660
1
vote
1
reply
541
views
updated 2.3 years ago by
Rory Stark
★
4.6k
•
written 2.3 years ago by
Mar Mar
▴
20
0
votes
2
replies
587
views
updated 2.5 years ago by
Rory Stark
★
4.6k
•
written 2.5 years ago by
hasse.bossenbroek
•
0
2
votes
7
replies
776
views
updated 2.6 years ago by
Rory Stark
★
4.6k
•
written 2.6 years ago by
Mar Mar
▴
20
0
votes
1
reply
284
views
updated 2.7 years ago by
Rory Stark
★
4.6k
•
written 2.7 years ago by
bioinfouser2
▴
10
0
votes
1
reply
672
views
updated 2.7 years ago by
Rory Stark
★
4.6k
•
written 2.8 years ago by
theodore.georgomanolis
•
0
0
votes
0
replies
396
views
2.8 years ago
tuteja.reetu
•
0
0
votes
0
replies
390
views
3.0 years ago
Johannes Rainer
★
2.0k
2
votes
1
reply
499
views
1
vote
4
replies
849
views
updated 3.3 years ago by
James W. MacDonald
62k
•
written 3.3 years ago by
jason.williams
•
0
1
vote
4
replies
489
views
updated 3.3 years ago by
Rory Stark
★
4.6k
•
written 3.3 years ago by
theodore.georgomanolis
•
0
1
vote
1
reply
485
views
updated 3.3 years ago by
Rory Stark
★
4.6k
•
written 3.3 years ago by
melnuesch
▴
10
0
votes
0
replies
1.1k
views
2
votes
2
replies
952
views
updated 3.5 years ago by
zhenfeng.liu1
▴
20
•
written 4.0 years ago by
star
▴
10
0
votes
1
reply
1.6k
views
updated 3.7 years ago by
Rory Stark
★
4.6k
•
written 3.7 years ago by
aviv.de-morgan
•
0
0
votes
0
replies
592
views
4.1 years ago
Ramiro Magno
▴
100
2
votes
2
replies
744
views
0
votes
3
replies
545
views
4.2 years ago
Bogdan
▴
660
0
votes
4
replies
833
views
updated 4.3 years ago by
Aaron Lun
★
28k
•
written 4.3 years ago by
Nicolas Servant
▴
260
0
votes
0
replies
569
views
0
votes
2
replies
629
views
updated 4.5 years ago by
Aaron Lun
★
28k
•
written 4.5 years ago by
Nicolas Servant
▴
260
0
votes
7
replies
1.4k
views
3
votes
6
replies
997
views
0
votes
5
replies
871
views
1
vote
1
reply
1.7k
views
0
votes
0
replies
854
views
5.2 years ago
nbkingsley
•
0
1
vote
5
replies
1.7k
views
0
votes
2
replies
845
views
updated 5.4 years ago by
Aaron Lun
★
28k
•
written 5.4 years ago by
gil.hornung
•
0
1
vote
2
replies
1.0k
views
updated 5.4 years ago by
Hervé Pagès
16k
•
written 5.4 years ago by
gnani.science
•
0
0
votes
1
reply
1.1k
views
updated 5.5 years ago by
Thomas Carroll
▴
420
•
written 5.5 years ago by
835102330
•
0
3
votes
11
replies
1.7k
views
updated 5.5 years ago by
Ryan C. Thompson
7.8k
•
written 5.5 years ago by
jms1223
▴
10
2
votes
2
replies
945
views
updated 5.6 years ago by
Gord Brown
▴
650
•
written 5.6 years ago by
AA
▴
10
0
votes
1
reply
1.1k
views
updated 5.6 years ago by
Guangchuang Yu
★
1.2k
•
written 5.6 years ago by
anupriyaverma1408
•
0
0
votes
0
replies
670
views
5.7 years ago
rezapanahi222
•
0
3
votes
2
replies
648
views
updated 5.9 years ago by
Wolfgang Huber
13k
•
written 5.9 years ago by
Bogdan
▴
660
0
votes
2
replies
1.2k
views
0
votes
3
replies
1.5k
views
updated 6.0 years ago by
Rory Stark
★
4.6k
•
written 6.1 years ago by
siklenkak
•
0
3
votes
4
replies
1.4k
views
3
votes
2
replies
1.6k
views
0
votes
1
reply
765
views
updated 6.4 years ago by
Rory Stark
★
4.6k
•
written 6.4 years ago by
D.Hemerich
•
0
0
votes
3
replies
919
views
updated 6.5 years ago by
Aaron Lun
★
28k
•
written 6.5 years ago by
damian.kao
•
0
0
votes
3
replies
3.2k
views
updated 6.5 years ago by
Rory Stark
★
4.6k
•
written 6.5 years ago by
sarah.blackstone7734
•
0
0
votes
2
replies
1.3k
views
updated 6.6 years ago by
Rory Stark
★
4.6k
•
written 6.6 years ago by
xie186
•
0
0
votes
6
replies
1.4k
views
1
vote
18
replies
2.4k
views
0
votes
0
replies
772
views
6.7 years ago
valentina.boeva
•
0
Recent ...
Replies
Answer: struggling to create a heatmap
by
ATpoint
★
2.1k
I am reluctant to read through that wall of code. Here is what would work. Note that prefiltering makes sense before, not after running `DE…
Answer: collapseReplicates error after tximeta
by
Michael Love
39k
The issue is that `collapseReplicates` just collapses `counts` and doesn't account for multiple assays which you need for e.g. Swish or oth…
Comment: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
by
ATpoint
★
2.1k
That having said, I recommend to inspect the MA-plots (`plotMA()`), at best the ones produced right from `res <- results(dds); plotMA(res)`…
Answer: Which genes are outliers in DESeq2?
by
ATpoint
★
2.1k
You can take over some of the lines from `results()` to find them easily:
```r
suppressPackageStartupMessages(library(DESeq2))
set.s…
Answer: Which genes are outliers in DESeq2?
by
Michael Love
39k
Outliers will have high maxCooks values in `mcols(dds)` -- the threshold is `qf(.99, p, n - p)` where n is sample size and p is number of c…
Votes
Awards
• All
Popular Question to
Ryan
•
0
Popular Question to
Guido Hooiveld
★
3.5k
Scholar to
James W. MacDonald
62k
Commentator to
Michael Love
39k
Popular Question to
twtoal
▴
10
Locations
• All
WEHI, Melbourne, Australia, 19 minutes ago
Germany, 26 minutes ago
Germany, 1 hour ago
Turkey, 1 hour ago
Italy, 1 hour ago
WEHI, Melbourne, Australia, 19 minutes ago
Germany, 26 minutes ago
Germany, 1 hour ago
Turkey, 1 hour ago
Italy, 1 hour ago
Traffic: 195 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6