Showing : ChIPQC • reset
2
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925
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DiffBind: Error in if (res$config$bCorPlot) { : the condition has length > 1
DiffBind ChIPQC
updated 8 months ago by ★ 4.8k • written 8 months ago by • 0
4
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13
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1.9k
views
BiocParallel error with ChIPQC
BiocManager ChIPQC RSamtools BiocParallel
updated 4 months ago by ★ 4.8k • written 11 months ago by • 0
0
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7
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1.1k
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CHIPQC error regarding BiocParallel
CHIPQC Diffbind chipseq rory stark Thomas Carroll
updated 9 months ago by ▴ 40 • written 3.1 years ago by ▴ 10
1
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2
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444
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Could it be possible to get an older version of ChIPQC?
ChIPQC ChIP-seq DiffBind Rory_Stark
10 months ago • updated 9 months ago etiennedanis • 0
0
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3
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566
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ChIPQC: Depths of coverage plot - Figure 1 of the ChIPQC report
ChIPQC
written 22 months ago by • 0
0
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1
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516
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saving png images and X11
ChipQC
updated 15 months ago by ★ 2.8k • written 15 months ago by ▴ 660
0
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0
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429
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Generate a custom annotation for ChIPQC
ChIPQC
updated 15 months ago by 62k • written 15 months ago by • 0
0
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2
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484
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ChIP-seq or CUT&RUN enrichment
ChIPQC ChIPpeakAnno
15 months ago Bogdan ▴ 660
3
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6
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12k
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Error: Faceting variables must have at least one value when plotting with ChIPQC
ChipQC chipqc
updated 8 months ago by • 0 • written 6.8 years ago by ▴ 10
0
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0
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318
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ChIPQC: Theme
ChIPQC
22 months ago etiennedanis • 0
1
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2
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503
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ChIPQC: log2 or log10?
ChIPQC
22 months ago etiennedanis • 0
3
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1
reply
537
views
ChIPQC 'Contigs of interest are not all in Bam file!!' error
ChIPQC
2.0 years ago Jonah ▴ 20
0
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2
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756
views
ChIPQC error in previously working code (BAM association error)
chipqc
updated 6 months ago by • 0 • written 2.1 years ago by ▴ 50
0
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2
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1.2k
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ChipQC 'names' attribute [9] must be the same length as the vector [2]'
chipqc
updated 2.3 years ago by • 0 • written 2.6 years ago by ▴ 40
2
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6
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1.3k
views
How to generate custom annotation for rat genome rn6 in ChIPQC
ChIPQC annotation rn6
2.7 years ago • updated 2.5 years ago Frédéric Crémazy • 0
0
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2
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1.1k
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Error while running ChIPQC
ChIPQC
updated 2.5 years ago by 3.8k • written 2.5 years ago by • 0
1
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3
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2.1k
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Downsampling ChIP-seq BAM files with spike in normalization factor before feeding into Diffbind
diffbind chipseq chipqc
updated 2.6 years ago by ★ 4.8k • written 5.2 years ago by ▴ 10
0
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0
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792
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ChIPQC BiocParallel problems and how to select the "PeakCaller" for broad histone modification
ChIPQC
2.6 years ago lida • 0
0
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0
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451
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ChIPQC cross-coverage plot
chipqc chip-seq
3.1 years ago tuteja.reetu • 0
0
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0
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387
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Missing some plots and columns in my ChIPQC report
ChIPQC BioConductor
3.3 years ago mudithekanayake • 0
0
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1
reply
501
views
ChIPQC produces empty cross correlation plot
chipqc cross correlation
3.4 years ago nikhil.ashok.joshi • 0
0
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1
reply
581
views
ChIPQC: Error in summary.factor
ChIPQC
updated 3.5 years ago by • 0 • written 3.6 years ago by • 0
0
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0
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468
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ChIPQC makes a neverending loop while using all chromosomes
chipqc chipseq ChIPQC
3.7 years ago laura.mannarino ▴ 20
1
vote
1
reply
801
views
ChIPQC: issues with report generation and QC metrics
ChIPQC software error
3.7 years ago ryleehackley • 0
2
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2
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1.0k
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ChIPQC gives Bam file has 297 contigs Error: subscript contains out-of-bounds indices
ChIP-seq ChIPQC QC
updated 3.8 years ago by ▴ 20 • written 4.3 years ago by ▴ 10
3
votes
6
replies
1.4k
views
Integer overflow issue with ChIPQC
ChIPQC Rstudio
updated 3.9 years ago by 25k • written 3.9 years ago by ▴ 30
0
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1
reply
1.1k
views
ChIPQC BiocParallel errors
ChIPQC ChIPQC error BiocParallel
3.9 years ago minervajunjun • 0
2
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4
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2.3k
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ChIPQC error: "names' attribute [9] must be the same length as the vector [7]"
ChIPQC
updated 22 months ago by • 0 • written 4.0 years ago by ▴ 20
0
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1
reply
760
views
Unable to annotate in ChIPQC using yeast genome
ChIPQC GenomicRanges ChIPpeakAnno
updated 2.0 years ago by • 0 • written 4.0 years ago by • 0
0
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1
reply
612
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ChIPQC error: NCList object is too deep
ChIPQC
updated 4.3 years ago by ▴ 420 • written 4.4 years ago by • 0
0
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4
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1.3k
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ATAC-Seq peaks quality control with ChIPQC package, but getting error
ATAC-Seq ChIPQC
updated 4.3 years ago by 62k • written 4.3 years ago by ▴ 10
0
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6
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1.1k
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ChiPQC: 1Error in 1:(2 * readlength(object)) : NA/NaN argument
ChiPQC
updated 4.3 years ago by 25k • written 4.3 years ago by • 0
0
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3
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884
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ChIPQC ERROR with "subscript out of bounds"
chipqc
4.4 years ago Chevy Xu • 0
2
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6
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1.7k
views
ChIPQC: error during annotation compilation
ChIPQC
updated 4.7 years ago by ▴ 420 • written 4.7 years ago by ▴ 10
3
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5
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2.0k
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ChIPQC - can't read in bam files
chipqc chipqcreport
4.7 years ago molly_the_minotaur ▴ 30
0
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0
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572
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ChIPQC Error in names(res) <- nms
chipqc
4.8 years ago gavrielmatt ▴ 30
1
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7
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2.2k
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ChipQC not loading files
ChipQC diffbind
updated 4.8 years ago by ▴ 420 • written 4.8 years ago by • 0
0
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2
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744
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ChipQCreport coverage plot failure?
ChipQC chipqcreport
4.8 years ago tapio.envall • 0
0
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4
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1.8k
views
ChIPQC error: "non-zero exit status"
software error package installation chipqc txdb.hsapiens.ucsc.hg18.knowngene
updated 4.9 years ago by 25k • written 4.9 years ago by • 0
0
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0
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852
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ChIPQC : ChIPQCreport : Error: Dimensions exceed 50 inches when saving plot with large sampleSheet
chipqc
5.3 years ago ZheFrench ▴ 40
0
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0
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624
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ChIPQC 0 unmapped does not agree with the samtool generated stats
ChIPQC
5.5 years ago ew152 • 0
0
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0
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917
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ChIPQC: Error in names(res) <- nms
ChIPQC chip-seq
5.5 years ago nbkingsley • 0
5
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11
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1.5k
views
ChIPQC Error in .Call2 NCList object is too deep
ChIPQC
updated 5.6 years ago by ▴ 420 • written 5.6 years ago by ▴ 10
0
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1
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1.2k
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Can ChIPQC analyze mandarin duck ChIP-Seq data?
ChIPQC
updated 5.7 years ago by ▴ 420 • written 5.7 years ago by ▴ 20
0
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4
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1.3k
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Unhelpful Errors Running ChIPQC on Computing Cluster
chipqc chipqcreport
5.8 years ago • updated 5.7 years ago jared.andrews07 ▴ 30
0
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0
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643
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ChIPQC stops at chr3 for calculating shift
chipqc
5.7 years ago psudyant • 0
2
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5
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1.4k
views
Diffbind: dba.plot retrieve variance explained
diffbind chipqc
updated 5.7 years ago by ★ 4.8k • written 5.8 years ago by ▴ 40
3
votes
12
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3.2k
views
ChIPQC failling when run ChIPQC() over 6 samples
chipqc
updated 5.8 years ago by ▴ 420 • written 8.2 years ago by • 0
0
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3
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1.0k
views
ChiPQC run time error
ChiPQC
updated 5.9 years ago by ▴ 420 • written 5.9 years ago by • 0
1
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3
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1.7k
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ChipQC Error: first error: could not find function "seqlevels<-"
software error chipqc
5.9 years ago tirza.doniger ▴ 20
50 results • Page 1 of 1
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Replies
Comment: BiocGenerics binary is outdated for macOS ARM by Michael Steinbaugh ▴ 90
Awesome thanks, for reference here's the lock issue: ``` ############################################################################## ##…
Answer: Trouble Loading Data into Champ by hfbarrerat • 0
Try myLoad <- champ.load("raw/",arraytype="EPIC")
Comment: BiocGenerics binary is outdated for macOS ARM by jennifer.wokaty ▴ 70
Thanks, Mike, for posting about this and thanks to Lori for noticing the lock. I removed it and RProtoBufLib passes R CMD check. Unfortunat…
Comment: BiocGenerics binary is outdated for macOS ARM by Michael Steinbaugh ▴ 90
Ah thanks for the update. Yeah I see that the flowClust release is the culprit: https://www.bioconductor.org/packages/release/bioc/html/flo…
Comment: Submitting BSgenome package for a new assembly by Manish • 0
Thanks for the info. This is very helpful. -Manish
Votes
Comment: BiocGenerics binary is outdated for macOS ARM
flowCore: using read.FCS with which.lines is not time efficient?
Comment: BiocGenerics binary is outdated for macOS ARM
Comment: Submitting BSgenome package for a new assembly
How to create "trait data" file for WGCNA
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