News: Final List of Deprecated Package Bioc 3.9
1
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7 months ago by
shepherl ♦♦ 1.7k
United States
shepherl ♦♦ 1.7k wrote:

The final list of deprecated packages for Bioc 3.9 is as follows:

Maintainer requested deprecation:

  • Software:

    • flowQ
    • miRsponge (renamed to miRspongeR)

Unresponsive/not-maintained packages:

  • Software:

    • ProCoNA
    • GOTHic
    • htSeqTools
    • rMAT
    • TSSi
    • gCrisprTools
  • Experiment Data Package:

    • PGPC

As the release deadlines approach, we will be sending emails out to packages that are broken across any platform in Bioconductor. We appreciate your timely response in fixing packages. Any package that has been warned, and is failing across ALL platforms will be up for immediate deprecation in devel 3.10. Thank you

ADD COMMENTlink modified 3 months ago • written 7 months ago by shepherl ♦♦ 1.7k
Answer: Final List of Deprecated Package Bioc 3.9
0
gravatar for shepherl
7 months ago by
shepherl ♦♦ 1.7k
United States
shepherl ♦♦ 1.7k wrote:

There are two other software package that will be deprecated for this coming release.

NGScopy
spliceSites
ADD COMMENTlink written 7 months ago by shepherl ♦♦ 1.7k
Answer: Final List of Deprecated Package Bioc 3.9
0
gravatar for shepherl
7 months ago by
shepherl ♦♦ 1.7k
United States
shepherl ♦♦ 1.7k wrote:

gCrisprTools has reached out and the package will no longer be deprecated.

flowQB and flowQBData will be deprecated.

ADD COMMENTlink modified 7 months ago • written 7 months ago by shepherl ♦♦ 1.7k

SVM2CRM has also requested deprecation

rSFFreader will also be deprecated

ADD REPLYlink modified 7 months ago • written 7 months ago by shepherl ♦♦ 1.7k
Answer: Final List of Deprecated Package Bioc 3.9
0
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7 months ago by
shepherl ♦♦ 1.7k
United States
shepherl ♦♦ 1.7k wrote:

DOQTL has also requested deprecation.

ADD COMMENTlink written 7 months ago by shepherl ♦♦ 1.7k
Answer: Final List of Deprecated Package Bioc 3.9
0
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3 months ago by
shepherl ♦♦ 1.7k
United States
shepherl ♦♦ 1.7k wrote:

GOTHiC has been undeprecated

ADD COMMENTlink written 3 months ago by shepherl ♦♦ 1.7k
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