News:Final List of Deprecated Package Bioc 3.9
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shepherl 2.7k
@lshep
Last seen 2 days ago
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The final list of deprecated packages for Bioc 3.9 is as follows:

Maintainer requested deprecation:

  • Software:

    • flowQ
    • miRsponge (renamed to miRspongeR)

Unresponsive/not-maintained packages:

  • Software:

    • ProCoNA
    • GOTHic
    • htSeqTools
    • rMAT
    • TSSi
    • gCrisprTools
  • Experiment Data Package:

    • PGPC

As the release deadlines approach, we will be sending emails out to packages that are broken across any platform in Bioconductor. We appreciate your timely response in fixing packages. Any package that has been warned, and is failing across ALL platforms will be up for immediate deprecation in devel 3.10. Thank you

deprecation release software experimentData News • 466 views
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shepherl 2.7k
@lshep
Last seen 2 days ago
United States

There are two other software package that will be deprecated for this coming release.

NGScopy
spliceSites
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shepherl 2.7k
@lshep
Last seen 2 days ago
United States

gCrisprTools has reached out and the package will no longer be deprecated.

flowQB and flowQBData will be deprecated.

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SVM2CRM has also requested deprecation

rSFFreader will also be deprecated

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shepherl 2.7k
@lshep
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United States

DOQTL has also requested deprecation.

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shepherl 2.7k
@lshep
Last seen 2 days ago
United States

GOTHiC has been undeprecated

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