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experimentData
•
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0
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5
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479
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News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
10 months ago • updated 3 months ago
shepherl
3.2k
2
votes
2
replies
836
views
News:
Final List of Deprecated Packages for Bioc3.13
Workflow
Software
ExperimentData
Deprecation
20 months ago • updated 15 months ago
shepherl
3.2k
1
vote
2
replies
766
views
News:
Final List of Deprecated Packages for Bioc3.12
annotation
software
experimentdata
deprecated
News
22 months ago • updated 21 months ago
shepherl
3.2k
0
votes
0
replies
307
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
2.5 years ago
shepherl
3.2k
0
votes
1
reply
363
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
2.6 years ago
shepherl
3.2k
0
votes
0
replies
373
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
2.7 years ago
shepherl
3.2k
0
votes
2
replies
672
views
News:
Final List of Deprecated Packages for Bioc3.10
annotation
experimentdata
deprecation
release
software
News
2.8 years ago • updated 2.7 years ago
shepherl
3.2k
0
votes
0
replies
416
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
2.9 years ago
shepherl
3.2k
0
votes
1
reply
521
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
deprecation
release
News
3.0 years ago • updated 2.9 years ago
shepherl
3.2k
1
vote
5
replies
683
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
3.4 years ago • updated 3.1 years ago
shepherl
3.2k
0
votes
3
replies
531
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
3.2 years ago
shepherl
3.2k
0
votes
1
reply
415
views
News:
Initial List of Deprecated Packages Bioc 3.10
software
experimentdata
release
deprecation
annotation
News
3.2 years ago
shepherl
3.2k
0
votes
1
reply
652
views
News:
List of Deprecated Package Bioc 3.9
deprecate
release
devel
software
experimentdata
News
3.5 years ago
shepherl
3.2k
0
votes
0
replies
621
views
News:
DEADLINE: All packages to pass R CMD build and R CMD check
release
software
experimentdata
workflows
News
4.3 years ago
shepherl
3.2k
0
votes
0
replies
691
views
How to load additional data from fcs files
fcs
concentration
experimentdata
5.3 years ago
jurg.spaak
• 0
0
votes
1
reply
995
views
Extract the gate in the data file (fcs file) from MoFlo Astrios
gate
cytometry
experimentdata
stategy
MoFlo Astrios
5.5 years ago
cr
• 0
1
vote
2
replies
792
views
Submitting an experimental data package
submit package
experimentdata
updated 6.5 years ago by
Martin Morgan
25k • written 6.5 years ago by
mark.dunning
• 0
1
vote
3
replies
995
views
How to update the data in an experimental data package
experimentdata
update
updated 7.9 years ago by
Laurent Gatto
1.5k • written 7.9 years ago by
paul.theodor.pyl
▴ 10
0
votes
2
replies
2.3k
views
Biobase - Error: ExpressionSet
Microarray
Annotation
GO
ExperimentData
Biobase
Microarray
Annotation
GO
ExperimentData
updated 8.8 years ago by
Laurent Gatto
1.5k • written 8.8 years ago by
Lisa Cohen
▴ 50
0
votes
4
replies
7.7k
views
Error while building ExpressionSet from scratch....
ExperimentData
LMGene
ExperimentData
LMGene
updated 10.7 years ago by
Martin Morgan
25k • written 10.7 years ago by
Bas Jansen
▴ 150
0
votes
1
reply
875
views
justRMA {affy} error
Annotation
ExperimentData
cdf
Annotation
ExperimentData
cdf
updated 11.0 years ago by
Martin Morgan
25k • written 11.0 years ago by
Julio Alejandro Di Rienzo
▴ 10
0
votes
2
replies
1.3k
views
RMA implemented in oligo package vs affy package
ExperimentData
cdf
affy
PROcess
oligo
ExperimentData
cdf
affy
PROcess
oligo
13.4 years ago
heyi xiao
▴ 360
0
votes
0
replies
991
views
Beadarray error: comparison of types not implemented
Annotation
ExperimentData
beadarray
Annotation
ExperimentData
beadarray
13.4 years ago
Anne-Kristin Stavrum
▴ 10
0
votes
0
replies
956
views
Beadarray error: comparison of types not implemented
Annotation
ExperimentData
Cancer
Biobase
beadarray
Annotation
ExperimentData
Cancer
13.4 years ago
Martin Morgan
25k
0
votes
3
replies
1.1k
views
ExpressionSet or MAList
Annotation
ExperimentData
Cancer
Annotation
ExperimentData
Cancer
updated 14.3 years ago by
Gordon Smyth
46k • written 14.3 years ago by
Daniel Brewer
★ 1.9k
0
votes
2
replies
1.1k
views
ReadAffy fails 64bit linux Error in .nextMethod(e1, e2) :
Annotation
ExperimentData
cdf
affy
Annotation
ExperimentData
cdf
affy
updated 14.4 years ago by
James W. MacDonald
60k • written 14.4 years ago by
Langdon W B
▴ 20
0
votes
3
replies
1.5k
views
ReadAffy Error
Annotation
ExperimentData
cdf
affy
affyio
Annotation
ExperimentData
cdf
affy
affyio
updated 14.9 years ago by
Sylvia.Merk@ukmuenster.de
▴ 60 • written 14.9 years ago by
Markus Schmidberger
▴ 380
0
votes
6
replies
2.5k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation
GO
Survival
ExperimentData
cdf
DynDoc
genefilter
geneplotter
multtest
affy
GO
updated 15.0 years ago by
Weiyin Zhou
▴ 220 • written 15.0 years ago by
Jenny Drnevich
★ 2.2k
0
votes
0
replies
1.3k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation
GO
Survival
ExperimentData
cdf
DynDoc
genefilter
geneplotter
multtest
affy
GO
15.0 years ago
Min Wook Kim
▴ 20
29 results • Page
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Comment: unable to install.packages("spatialLIBD")
by
Leonardo Collado Torres
▴ 1000
All the solutions Lori proposed are valid. The `STexampleData` package I think has only 1 of our samples (see https://bioconductor.org/pack…
Answer: how to use Rsamtools to parse extra fields from STAR alignment
by
Martin Morgan
25k
The 'extra columns' are called 'tags' in the SAM specification. Following the documentation `?ScanBamParam` you should add `tag = "NH"`. Se…
Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip
by
Delta._.43
▴ 10
Yes, indeed it is the same error. Here are the first few lines of my count file. ``` "ENSG00000000003":"001" 0 "ENSG00000000003":"002" 1032…
Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip
by
Alejandro Reyes
★ 1.8k
Thanks for your detail post. I think this might be related to this issue here: https://support.bioconductor.org/p/9143537/ Just to verify…
Answer: spot- vs cell-level data access
by
Leonardo Collado Torres
▴ 1000
Hi, The `SingleCellExperiment` object you can download with `fetch_data(type = "sce")` pre-dates the creation of `SpatialExperiment`. No…
Votes
Answer: spot- vs cell-level data access
Answer: unable to install.packages("spatialLIBD")
Comment: unable to install.packages("spatialLIBD")
error running UniProt.ws
Answer: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU
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▴ 1000
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