Question: Unable to run dmp <- dmpFinder() function with R 3.6
gravatar for hope2003
6 months ago by
hope20030 wrote:

Hi, I am trying to run the following command for dmp. I have used the same function in R 3.5.3 and it was working fine. Now in R 3.6 it is giving me the following error: Any solution please ?

> Sample_Group <- pData(gset.funnorm)$Sample_Group   
> dmp <- dmpFinder(beta, pheno = Sample_Group , type = "categorical") 

Error in smooth.spline(lambda, vec.p0, w = ncs.weights, df = 3) : 
  missing or infinite values in inputs are not allowed
In addition: Warning messages:
1: Partial NA coefficients for 234 probe(s) 
2: In pf(Fstat, df1, df2, lower.tail = FALSE) : NaNs produced
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ADD COMMENTlink written 6 months ago by hope20030

Please include a reproducible example, including the output of BiocManager::valid() (see for further details). I can then attempt to help diagnose the issue.

ADD REPLYlink written 6 months ago by Peter Hickey460
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