Question: Unable to run dmp <- dmpFinder() function with R 3.6
0
6 months ago by
hope20030
hope20030 wrote:

Hi, I am trying to run the following command for dmp. I have used the same function in R 3.5.3 and it was working fine. Now in R 3.6 it is giving me the following error: Any solution please ?

> Sample_Group <- pData(gset.funnorm)\$Sample_Group
> dmp <- dmpFinder(beta, pheno = Sample_Group , type = "categorical")

Error in smooth.spline(lambda, vec.p0, w = ncs.weights, df = 3) :
missing or infinite values in inputs are not allowed
1: Partial NA coefficients for 234 probe(s)
2: In pf(Fstat, df1, df2, lower.tail = FALSE) : NaNs produced

normalization minfi news • 161 views
written 6 months ago by hope20030

Please include a reproducible example, including the output of BiocManager::valid() (see https://support.bioconductor.org/info/faq/ for further details). I can then attempt to help diagnose the issue.