Unable to run dmp <- dmpFinder() function with R 3.6

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hope2003 • 0

@hope2003-20801

Last seen 4.9 years ago

Hi, I am trying to run the following command for dmp. I have used the same function in R 3.5.3 and it was working fine. Now in R 3.6 it is giving me the following error: Any solution please ?

> Sample_Group <- pData(gset.funnorm)$Sample_Group   
> dmp <- dmpFinder(beta, pheno = Sample_Group , type = "categorical") 

Error in smooth.spline(lambda, vec.p0, w = ncs.weights, df = 3) : 
  missing or infinite values in inputs are not allowed
In addition: Warning messages:
1: Partial NA coefficients for 234 probe(s) 
2: In pf(Fstat, df1, df2, lower.tail = FALSE) : NaNs produced

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ADD COMMENT • link updated 4.9 years ago by shepherl 3.8k • written 4.9 years ago by hope2003 • 0

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Please include a reproducible example, including the output of BiocManager::valid() (see https://support.bioconductor.org/info/faq/ for further details). I can then attempt to help diagnose the issue.

ADD REPLY • link 4.9 years ago Peter Hickey ▴ 740

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