Hello, I am trying to analyze differential expressed genes using NanoString data. There are a number of tools that deal with RNA-seq data, but Nanostring data is not well documented. Since Nanostring data is also a gene count data, I think it is possible to analyze using RNA-seq tool.
Is it possible to analyze differential expressed genes with the DESeq2 package using NanoString data?
Many posts say that if you perform data normalization on your own, you can use DESeq to analyze differential gene analysis. Is that clear?
If you have good tools for dealing NanoString data, please let me know.