News:Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
0
0
Entering edit mode
@kaylainterdonato-17327
Last seen 10 months ago
United States

Hello Bioconductor Community!

The newest db0s, OrgDbs, and TxDbs annotation packages for the upcoming Bioconductor 3.12 release are up and available for download in the devel version of Bioconductor.

The deadline for submitting contributed annotation will be Wednesday October 21st.

The new db0 packages are:

  • anopheles.db0_3.12.0.tar.gz
  • arabidopsis.db0_3.12.0.tar.gz
  • bovine.db0_3.12.0.tar.gz
  • canine.db0_3.12.0.tar.gz
  • chicken.db0_3.12.0.tar.gz
  • chimp.db0_3.12.0.tar.gz
  • ecoliK12.db0_3.12.0.tar.gz
  • ecoliSakai.db0_3.12.0.tar.gz
  • fly.db0_3.12.0.tar.gz
  • human.db0_3.12.0.tar.gz
  • malaria.db0_3.12.0.tar.gz
  • mouse.db0_3.12.0.tar.gz
  • pig.db0_3.12.0.tar.gz
  • rat.db0_3.12.0.tar.gz
  • rhesus.db0_3.12.0.tar.gz
  • worm.db0_3.12.0.tar.gz
  • xenopus.db0_3.12.0.tar.gz
  • yeast.db0_3.12.0.tar.gz
  • zebrafish.db0_3.12.0.tar.gz

The new OrgDb packages are:

  • GO.db_3.12.0.tar.gz
  • org.Ag.eg.db_3.12.tar.gz
  • org.At.tair.db_3.12.tar.gz
  • org.Bt.eg.db_3.12.tar.gz
  • org.Ce.eg.db_3.12.tar.gz
  • org.Cf.eg.db_3.12.tar.gz
  • org.Dm.eg.db_3.12.tar.gz
  • org.Dr.eg.db_3.12.tar.gz
  • org.EcK12.eg.db_3.12.tar.gz
  • org.EcSakai.eg.db_3.12.tar.gz
  • org.Gg.eg.db_3.12.tar.gz
  • org.Hs.eg.db_3.12.tar.gz
  • org.Mm.eg.db_3.12.tar.gz
  • org.Mmu.eg.db_3.12.tar.gz
  • org.Pf.plasmo.db_3.12.tar.gz
  • org.Pt.eg.db_3.12.tar.gz
  • org.Rn.eg.db_3.12.tar.gz
  • org.Sc.eg.db_3.12.tar.gz
  • org.Ss.eg.db_3.12.tar.gz
  • org.Xl.eg.db_3.12.tar.gz
  • PFAM.db_3.12.tar.gz

The new TxDb packages are:

  • TxDb.Btaurus.UCSC.bosTau8.refGene_3.12.0.tar.gz
  • TxDb.Celegans.UCSC.ce11.ensGene_3.12.0.tar.gz
  • TxDb.Dmelanogaster.UCSC.dm6.ensGene_3.12.0.tar.gz
  • TxDb.Ggallus.UCSC.galGal4.refGene_3.12.0.tar.gz
  • TxDb.Ggallus.UCSC.galGal5.refGene_3.12.0.tar.gz
  • TxDb.Mmulatta.UCSC.rheMac3.refGene_3.12.0.tar.gz
  • TxDb.Mmulatta.UCSC.rheMac8.refGene_3.12.0.tar.gz
  • TxDb.Mmusculus.UCSC.mm39.refGene_3.12.0.tar.gz
  • TxDb.Ptroglodytes.UCSC.panTro4.refGene_3.12.0.tar.gz
  • TxDb.Ptroglodytes.UCSC.panTro5.refGene_3.12.0.tar.gz
  • TxDb.Rnorvegicus.UCSC.rn5.refGene_3.12.0.tar.gz
  • TxDb.Rnorvegicus.UCSC.rn6.ncbiRefSeq_3.12.0.tar.gz
  • TxDb.Sscrofa.UCSC.susScr11.refGene_3.12.0.tar.gz
  • TxDb.Sscrofa.UCSC.susScr3.refGene_3.12.0.tar.gz

Thank you

annotation db0 news release News • 1.2k views
ADD COMMENT
0
Entering edit mode

My apologies - I seem to have a typo in the names of the updated OrgDb packages. Please see the following corrected list:

  • org.Ag.eg.db_3.12.0.tar.gz
  • org.At.tair.db_3.12.0.tar.gz
  • org.Bt.eg.db_3.12.0.tar.gz
  • org.Ce.eg.db_3.12.0.tar.gz
  • org.Cf.eg.db_3.12.0.tar.gz
  • org.Dm.eg.db_3.12.0.tar.gz
  • org.Dr.eg.db_3.12.0.tar.gz
  • org.EcK12.eg.db_3.12.0.tar.gz
  • org.EcSakai.eg.db_3.12.0.tar.gz
  • org.Gg.eg.db_3.12.0.tar.gz
  • org.Hs.eg.db_3.12.0.tar.gz
  • org.Mm.eg.db_3.12.0.tar.gz
  • org.Mmu.eg.db_3.12.0.tar.gz
  • org.Pf.plasmo.db_3.12.0.tar.gz
  • org.Pt.eg.db_3.12.0.tar.gz
  • org.Rn.eg.db_3.12.0.tar.gz
  • org.Sc.eg.db_3.12.0.tar.gz
  • org.Ss.eg.db_3.12.0.tar.gz
  • org.Xl.eg.db_3.12.0.tar.gz
  • PFAM.db_3.12.0.tar.gz
ADD REPLY

Login before adding your answer.

Traffic: 740 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6