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News:
BioCAsia Virtual Meeting, 15-18 October 2020
news
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News
written 20 months ago by
Matthew Ritchie
▴ 1000
2
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323
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News:
New Bioconductor Community Advisory Board Members for 2021
bioconductoroversight
news
community
BiocVersion
13 months ago
Matthew Ritchie
▴ 1000
4
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1
reply
1.4k
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News:
Join the Bioconductor Community Advisory Board
bioconductoroversight
community
BiocVersion
news
updated 14 months ago by
aedin
• 0 • written 15 months ago by
Matthew Ritchie
▴ 1000
0
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0
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397
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News:
Early career researchers: nominate to present your work at BVCN virtual conference on microbiome research
microbiome
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Conference
15 months ago
Matthew Ritchie
▴ 1000
0
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1
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455
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News:
Community engagement and outreach award
bioconductor
bioc2020
award
community
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written 23 months ago by
shepherl
3.1k
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News:
SUPPORT SITE UPGRADE TODAY -- PLEASE REFRAIN FROM POSTING
support site
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19 months ago
shepherl
3.1k
2
votes
3
replies
368
views
DESeq2 multiple groups comparison issues, incorrect log2FC results in a small proportion of genes
deseq2
updated 18 months ago by
Michael Love
36k • written 19 months ago by
helenhuang.math
• 0
1
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2
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717
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News:
Final List of Deprecated Packages for Bioc3.12
annotation
software
experimentdata
deprecated
News
19 months ago
shepherl
3.1k
0
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0
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290
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News:
BridgeDbR devel package upgraded to BridgeDb 3
bridgedbr
News
19 months ago
egon.willighagen
▴ 10
0
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1
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431
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News:
Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
annotation
db0
news
release
News
19 months ago
kayla.interdonato
140
1
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0
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468
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News:
Project-wide Code of Conduct statement for Bioconductor
Coc
code
conduct
Bioconductor
News
19 months ago
Laurent Gatto
1.5k
3
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0
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806
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News:
List of Deprecated Packages for Bioc3.12
annotation
software
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deprecated
News
20 months ago • updated 19 months ago
shepherl
3.1k
1
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0
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462
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News:
New Package Submission Deadline for Bioc Release 3.12
release
new package
submission
deadline
News
20 months ago
shepherl
3.1k
0
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0
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439
views
News:
Bioconductor Release 3.12 Schedule Posted
packages
release
deadlines
builds
News
20 months ago
shepherl
3.1k
4
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2
replies
534
views
News:
ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
EnsDb
ensembldb
annotation
AnnotationHub
News
21 months ago
Johannes Rainer
★ 1.9k
0
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1
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448
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News:
Ensembl 101 hase been released
Ensembl
BioMart
News
21 months ago
mchakiachvili
▴ 20
1
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0
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288
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News:
James Taylor foundation: scholarships to Biological Data Science 2020 at CSHL
scholarships
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22 months ago
Kasper Daniel Hansen
6.5k
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3
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380
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News:
New Package Submission Workflow Updates!
new packages
submission
bioconductor
News
updated 10 months ago by
jonathan.dekermanjian
• 0 • written 22 months ago by
shepherl
3.1k
1
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2
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1.8k
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News:
Bioc2020 - Call for BOF/HAK/FAQ Sections
conference
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deadline
News
2.1 years ago • updated 23 months ago
shepherl
3.1k
0
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0
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480
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News:
Bioc2020 - Call for BOF/HAK/FAQ Sections Still Open
conference
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23 months ago
shepherl
3.1k
0
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0
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293
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News:
Award Nomination Deadline Monday June 15th!
bioc2020
awards
bioconductor
recognition
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23 months ago
shepherl
3.1k
0
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0
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272
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News:
Scientific or Informatic Technology Advancement Award!
bioconductor
bioc2020
awards
advancement
new technology
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23 months ago
shepherl
3.1k
0
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0
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289
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News:
Long-term contribution award
bioc2020
bioconductor
lifetime
recognition
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23 months ago
shepherl
3.1k
0
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0
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292
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Documentation Bioconductor Award
bioconductor
bioc2020
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documentation
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23 months ago
shepherl
3.1k
0
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0
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278
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News:
List of Deprecated Packages for Bioc3.12
deprecated
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software
annotation
News
23 months ago
shepherl
3.1k
0
votes
0
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299
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News:
New Package Bioconductor Award
bioconductor
bioc2020
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News
23 months ago
shepherl
3.1k
0
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0
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300
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News:
Support Site Bioconductor Award
bioconductor
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23 months ago
shepherl
3.1k
0
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0
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269
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News:
Bioc2020 - Virtual Conference Registration
bioc2020
conference
registration
News
23 months ago
shepherl
3.1k
0
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0
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263
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News:
Updated annotation packages
annotation
news
News
23 months ago
kayla.interdonato
140
4
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1
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3.2k
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News:
Nominations for Bioconductor Awards!
Bioc2020
Bioconductor
Awards
Recognition
News
2.1 years ago • updated 23 months ago
shepherl
3.1k
0
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0
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229
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News:
Single Package Builder / New Package Submission
new package
build machines
infrastructure
News
24 months ago
shepherl
3.1k
0
votes
1
reply
415
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News:
Bioconductor Technical Advisory Board Nominees, 2020
tab
News
written 24 months ago by
Martin Morgan
25k
4
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0
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278
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News:
Public Calendar of Events
Bioconductor
events
News
24 months ago
shepherl
3.1k
1
vote
0
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397
views
News:
ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
ensembl
annotation
ensembldb
News
2.0 years ago
Johannes Rainer
★ 1.9k
1
vote
1
reply
385
views
News:
Issues with annotation packages
annotation
news
release
News
2.0 years ago
kayla.interdonato
140
0
votes
3
replies
398
views
News:
Final List of Deprecated Packages for Bioc3.11
software
annotation
experiment data
deprecated
News
updated 2.1 years ago by
kayla.interdonato
140 • written 2.1 years ago by
shepherl
3.1k
0
votes
0
replies
276
views
News:
Bioconductor 3.11 OrgDb and TxDb packages now available
annotation
news
release
News
2.1 years ago
kayla.interdonato
140
1
vote
0
replies
271
views
News:
Ensembl 100 has been released
biomart
ensembl
e100
mart
news
News
2.1 years ago
Thomas Maurel
▴ 790
4
votes
0
replies
285
views
News:
Bioconductor 3.11 is Released!
software
bioconductor
release
packages
News
2.1 years ago
shepherl
3.1k
0
votes
4
replies
470
views
News:
BridgeDb build fails due to website unavailability
bridgedbr
News
2.5 years ago • updated 2.1 years ago
egon.willighagen
▴ 10
0
votes
0
replies
321
views
News:
Import Deadlines for RELEASE 3.11
release
devel
deadline
bioconductor
News
2.1 years ago
shepherl
3.1k
10
votes
0
replies
2.1k
views
News:
Professor James Taylor
in memoriam
News
2.1 years ago
Martin Morgan
25k
0
votes
0
replies
298
views
News:
Last Day to Submit New Packages for Bioconductor Release 3.11
deadline
new submission
bioconductor
release
News
2.1 years ago
shepherl
3.1k
2
votes
0
replies
321
views
News:
Bioconductor Community Advisory Board Members
news
bioconductor oversight
community
News
2.1 years ago
Matthew Ritchie
▴ 1000
0
votes
1
reply
345
views
News:
New Package and New Docker Image Submission Deadline for Bioc Release 3.11
release
package submission
docker
deadline
News
2.2 years ago • updated 2.1 years ago
shepherl
3.1k
0
votes
0
replies
255
views
News:
Deadline for devel branch 3.11 to pass R CMD build and R CMD check
release
devel
bioconductor
News
2.1 years ago
shepherl
3.1k
0
votes
0
replies
238
views
News:
Bioconductor Release 3.10 Code Freeze Deadline
release
deadline
bioconductor
News
2.1 years ago
shepherl
3.1k
0
votes
0
replies
232
views
News:
Bioconductor 3.11 db0s are available
annotation
db0
news
release
News
2.1 years ago
kayla.interdonato
140
1
vote
0
replies
240
views
News:
Importing alevin inferential replicates into R with tximport
tximport
News
2.2 years ago
Michael Love
36k
1
vote
0
replies
293
views
News:
Bioconductor Release 3.11 Schedule Posted
release
deadlines
builds
packages
News
2.2 years ago
shepherl
3.1k
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Answer: Robust Multi-array Average could get negative value or not?
by
James W. MacDonald
59k
After running RMA, your data have been logged, base 2. Any value < 1 will have a negative value. Looking at the data from that GEO submissi…
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Yang Shi
• 0
Got that sir, thanks so much!
Comment: UniprotKB AC/ID to Entrez ID Conversion
by
Guido Hooiveld
★ 3.2k
No, no need to modify `up`. It somehow has to do with the R.BioC version; it works when using the latest versions (R-4.2.0/BioC-3.15), but…
Comment: UniprotKB AC/ID to Entrez ID Conversion
by
tom.kloter
• 0
Thanks a lot for your response! I tried the code in my script and got to the following result: ``` > up <- UniProt.ws(taxId=9606) > up "U…
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Guido Hooiveld
★ 3.2k
Regarding the normalization method (SCAN); I have only used RMA for the reasons James explained in one of your other threads (https://suppo…
Votes
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
A: coefficient not estimable (limma warning)
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