Question: Rearrange dendrogram to match merged modules in WGCNA?
gravatar for Jon Bråte
3.1 years ago by
Jon Bråte130
Jon Bråte130 wrote:


In the WGCNA you can merge very similar modules, but then some modules might be split up when matching to the original dendrogram. I was wondering if it is possible to draw the dendrogram (and the heatmap) so that the individual modules are together (e.g. the blue module in the image)?


ADD COMMENTlink modified 3.1 years ago by Keith Hughitt90 • written 3.1 years ago by Jon Bråte130
gravatar for Keith Hughitt
3.1 years ago by
United States
Keith Hughitt90 wrote:

Hi Jon,

I don't know of any way to update the dendrogram after it has been created, but one thing you might try is to tweak some of the earlier parameters instead, and skip the module merging. In my experience, you can often arrive at similar results simply by increasing the minimum module size, or decreasing /disabling the "deepSplit" parameter.



ADD COMMENTlink written 3.1 years ago by Keith Hughitt90

Thanks for the advice!

ADD REPLYlink written 3.1 years ago by Jon Bråte130
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 158 users visited in the last hour