Bioconductor Hclust

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4.9k

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dendrogram hclust textanalysis R RStudio

4.9 years ago • updated 4.8 years ago Abby ▴ 10

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2.2k

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deseq2 pca hclust

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by Arindam ▴ 80

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2.6k

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hclust hierarchical clustering clustering weight

updated 8.6 years ago by Aaron Lun ★ 29k • written 8.6 years ago by danielle.newby • 0

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3.8k

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pheatmap hclust R dendrogram

8.8 years ago vd4mmind • 0

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2.1k

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WGCNA hclust

8.8 years ago bag59 • 0

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2.1k

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heatmap.2 hclust reorderfun

updated 9.0 years ago by James W. MacDonald 68k • written 9.0 years ago by b.nota ▴ 370

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2.2k

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clustering hclust maSigPro

updated 10.0 years ago by efejiroe • 0 • written 10.5 years ago by dimitri.leonid.lindenwald ▴ 50

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2.9k

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hclust heatmap

11.0 years ago rmgreer • 0

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4.9k

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wgcna dendrogram network hclust

updated 11.4 years ago by Keith Hughitt ▴ 180 • written 11.4 years ago by Jon Bråte ▴ 270

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4.5k

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wgcna hclust plotdendroandcolors dendrogram

updated 11.4 years ago by James W. MacDonald 68k • written 11.4 years ago by Keith Hughitt ▴ 180

10 results • Page 1 of 1

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Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0

Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Votes

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

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Scholar to Gordon Smyth 53k

Popular Question to Peter Hickey ▴ 760