Showing : hclust • reset
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Error with hclust
dendrogram hclust textanalysis R RStudio
9 months ago Abby ▴ 10
1
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4
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Difference in PCA variance calculation in DESeq2
deseq2 pca hclust
updated 2.3 years ago by 35k • written 2.3 years ago by ▴ 50
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1.2k
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Observation/case weighting in cluster analysis in R
hclust hierarchical clustering clustering weight
updated 4.5 years ago by ★ 27k • written 4.5 years ago by • 0
0
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1
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1.6k
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How to extract the distrances of the column dendrogram from pheatmap and just plot them with the distance scale?
pheatmap hclust R dendrogram
4.7 years ago vd4mmind • 0
0
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3
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902
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WGCNA crashes R on OSX
WGCNA hclust
4.8 years ago bag59 • 0
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1
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1.2k
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heatmap.2 reorder branches
heatmap.2 hclust reorderfun
updated 5.0 years ago by 58k • written 5.0 years ago by ▴ 360
0
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1
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1.1k
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Microarray time-course clustering, using "hclust" in masigPro
clustering hclust maSigPro
updated 5.9 years ago by • 0 • written 6.5 years ago by ▴ 50
1
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2
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1.8k
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Supervised clustering by sample
hclust heatmap
6.9 years ago rmgreer • 0
1
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2
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2.9k
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Rearrange dendrogram to match merged modules in WGCNA?
wgcna dendrogram network hclust
updated 7.3 years ago by ▴ 150 • written 7.3 years ago by ▴ 180
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1
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2.8k
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Plotting an hclust sub-tree in WGCNA?
wgcna hclust plotdendroandcolors dendrogram
updated 7.3 years ago by 58k • written 7.3 years ago by ▴ 150
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Comment: Multi-factor paired RNAseq differential analysis with DEseq2 by swbarnes2 ▴ 970
You can have as many columns as you like in coldata, only those specified in the design will be used when you do the DESeq command So sur…
Comment: Multi-factor paired RNAseq differential analysis with DEseq2 by Matthew • 0
Thanks for the suggestion, I'll give that a try! Based on the PCA, all three factors do tend to influence the results, so I'll try the colu…
Comment: fgsea not downloading due to new r version. Is there a way around this? by amir.khan • 0
Seems to have done the trick and worked. thanks!
Comment: Multi-factor paired RNAseq differential analysis with DEseq2 by Michael Love 35k
Just to underscore swbarnes2 advice above, I'd also recommend discussing statistical design with a local statistician or someone familiar w…
Answer: Multi-factor paired RNAseq differential analysis with DEseq2 by swbarnes2 ▴ 970
First, I'd start by looking at all your samples in PCA. Does sex have a strong effect? Does it make sense to compare one tissue with anot…
Votes
Answer: fgsea not downloading due to new r version. Is there a way around this?
Comment: Unable to install Rhtslib in R-4.1.1
Answer: fgsea not downloading due to new r version. Is there a way around this?
Answer: Swish with more than two conditions. Add support for contrasts?
Answer: ERROR: unable to find an inherited method for function ‘dispersions<-’ for signa
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