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hclust
•
reset
1
vote
7
replies
1.3k
views
Error with hclust
dendrogram
hclust
textanalysis
R
RStudio
22 months ago • updated 21 months ago
Abby
▴ 10
1
vote
4
replies
694
views
Difference in PCA variance calculation in DESeq2
deseq2
pca
hclust
updated 3.3 years ago by
Michael Love
39k • written 3.3 years ago by
ag1805x
▴ 50
0
votes
1
reply
1.5k
views
Observation/case weighting in cluster analysis in R
hclust
hierarchical clustering
clustering
weight
updated 5.5 years ago by
Aaron Lun
★ 28k • written 5.5 years ago by
danielle.newby
• 0
0
votes
1
reply
2.0k
views
How to extract the distrances of the column dendrogram from pheatmap and just plot them with the distance scale?
pheatmap
hclust
R
dendrogram
5.7 years ago
vd4mmind
• 0
0
votes
3
replies
1.1k
views
WGCNA crashes R on OSX
WGCNA
hclust
5.8 years ago
bag59
• 0
0
votes
1
reply
1.3k
views
heatmap.2 reorder branches
heatmap.2
hclust
reorderfun
updated 6.0 years ago by
James W. MacDonald
62k • written 6.0 years ago by
b.nota
▴ 360
0
votes
1
reply
1.3k
views
Microarray time-course clustering, using "hclust" in masigPro
clustering
hclust
maSigPro
updated 6.9 years ago by
efejiroe
• 0 • written 7.5 years ago by
dimitri.leonid.lindenwald
▴ 50
1
vote
2
replies
2.0k
views
Supervised clustering by sample
hclust
heatmap
7.9 years ago
rmgreer
• 0
1
vote
2
replies
3.3k
views
Rearrange dendrogram to match merged modules in WGCNA?
wgcna
dendrogram
network
hclust
updated 8.3 years ago by
Keith Hughitt
▴ 180 • written 8.3 years ago by
Jon Bråte
▴ 240
0
votes
1
reply
3.0k
views
Plotting an hclust sub-tree in WGCNA?
wgcna
hclust
plotdendroandcolors
dendrogram
updated 8.3 years ago by
James W. MacDonald
62k • written 8.3 years ago by
Keith Hughitt
▴ 180
10 results • Page
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Comment: AnnotationForge::makeOrgPackageFromNCBI - ERROR to access url (NCBI FTP site)
by
jeffbrick852
• 0
[us customer service][1] [1]: https://www.us-customer-service.com/
Answer: DEG analysis with Paired-end RNA-seq data using DESeq2, do I need to contain the
by
swbarnes2
★ 1.2k
The vignette includes that in the design because the example is a mix of single and paired end reads, and that is added to the design so th…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
`PoolStatus` just indicates whether a sample is a pool or not, i.e., the first option.
Comment: How to map geneIds to ENTREZIDs
by
stacy.genovese
• 0
James - I wish I knew where you lived so I could buy you a beer! Thank you so much for your help. I'm going to work now on converting th…
Answer: How to map geneIds to ENTREZIDs
by
James W. MacDonald
62k
You are close. But note that the geneIds in your `GRanges` object are NCBI Gene IDs, which used to be called Entrez Gene IDs, and which are…
Votes
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Answer: How to map geneIds to ENTREZIDs
Comment: ComplexHeatmap - Default distance and hierarchical clustering methods
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Awards
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to
James W. MacDonald
62k
Commentator
to
vs2001
▴ 30
Scholar
to
Mike Smith
★ 5.9k
Popular Question
to
shepherl
3.4k
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Gordon Smyth
47k
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