Showing : dendrogram • reset
1
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7
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Error with hclust
dendrogram hclust textanalysis R RStudio
10 weeks ago • updated 7 weeks ago Abby ▴ 10
0
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1
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1.4k
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How to extract the distrances of the column dendrogram from pheatmap and just plot them with the distance scale?
pheatmap hclust R dendrogram
4.1 years ago vd4mmind • 0
2
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1
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1.6k
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Assign custom dendrogram to ComplexHeatmap Heatmap object
complexheatmap heatmap.2 dendrogram dendextend heatmap
updated 4.6 years ago by ▴ 130 • written 4.6 years ago by ▴ 570
1
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2
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2.7k
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Rearrange dendrogram to match merged modules in WGCNA?
wgcna dendrogram network hclust
updated 6.7 years ago by ▴ 140 • written 6.7 years ago by ▴ 180
0
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1
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2.6k
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Plotting an hclust sub-tree in WGCNA?
wgcna hclust plotdendroandcolors dendrogram
updated 6.7 years ago by 57k • written 6.7 years ago by ▴ 140
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Comment: Data input for aracne2regulon function in viper package by Luna_P • 0
Thank you!
Comment: Data input for aracne2regulon function in viper package by Keith Hughitt ▴ 140
Hi, I'm afraid not, so I don't think I can be much help, unfortunately. In the past, the authors of ARACNe-AP were generally quite responsi…
Comment: Data input for aracne2regulon function in viper package by Luna_P • 0
Hello Keith, I am currently trying to use my ARACNE-AP generated networks in Viper. I did all three steps you mentioned above but my prob…
Answer: DESeq2 for allele-specific expression with contrasts between conditions by Michael Love 33k
There is a section in the vignette on interactions that will help you here. You want to test for within-individual effects (`allele`) and c…
Answer: Issues with Tximport by Michael Love 33k
Your file has no version numbers, while your `tx2gene` does have version numbers. While the names look similar, they are not a match. tximp…
Votes
Comment: Data input for aracne2regulon function in viper package
Comment: DESeq2: NA's in mcols(object)$betaConv
Answer: Using tximeta::summarizeToGene function; Warning message: call dbDisconnect() w
simultaneous use of robust and weighting methods in limma
simultaneous use of robust and weighting methods in limma
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Popular Question to Keith Hughitt ▴ 140
Scholar to Aaron Lun ★ 26k
Teacher to Martin Morgan 25k
Teacher to alexvpickering ▴ 110
Popular Question to k.vitting.seerup ▴ 100
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