Biostar Dendrogram

Showing : dendrogram • reset

vote

replies

405

views

dendrogram hclust textanalysis R RStudio

5 months ago Abby ▴ 10

votes

1.5k

views

pheatmap hclust R dendrogram

4.3 years ago vd4mmind • 0

votes

1.7k

views

complexheatmap heatmap.2 dendrogram dendextend heatmap

updated 4.9 years ago by jokergoo ▴ 130 • written 4.9 years ago by enricoferrero ▴ 570

vote

replies

2.8k

views

wgcna dendrogram network hclust

updated 7.0 years ago by Keith Hughitt ▴ 150 • written 7.0 years ago by Jon Bråte ▴ 180

votes

2.7k

views

wgcna hclust plotdendroandcolors dendrogram

updated 7.0 years ago by James W. MacDonald 58k • written 7.0 years ago by Keith Hughitt ▴ 150

5 results • Page 1 of 1

Recent ...

Replies

Comment: Volcano plots of DEGs from Swish are weird by Qin ▴ 10

Thans for your reply. I'm sorry for reply so late, because I didn't getting any messages in my email. I will read details of the vignette.

Comment: At least one covariate is confounded with batch! Please remove confounded covari by NewBioInfo • 0

Thank you, James. I was indeed using the wrong matrix. The `nonExtimable` did give me the column name which was causing the issue but I do …

Comment: Returning to edgeR version 3.26.1? by Gordon Smyth 43k

I don't think that any changes to edgeR between 3.26.1 and 3.26.8 could have caused the changes that you show.

Comment: Returning to edgeR version 3.26.1? by mvanhorn • 0

Thank you very much for your reply! Our project is a reanalysis of large sets of RNA-seq data to identify circular RNAs using the CIRIquan…

Comment: "full model matrix is less than full rank" by ATpoint ▴ 840

My best guess is that young and old are not "young" or "old" but include some hidden whitespaces like " young" or "old ". That would then m…

Votes

simultaneous use of robust and weighting methods in limma

Answer: Swish direction of comparison based on order of factors

Comment: Gradient dotplot

Answer: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi

Awards • All

Scholar to Gordon Smyth 43k

Popular Question to Dario Strbenac ★ 1.5k

Popular Question to Hans-Ulrich Klein ▴ 330