I was trying to install you package: 'ggtree' and getting all the time the warning that package 'ggtree' is not available (for R version 3.1.2). Any clue what is going on?
BioC_mirror: http://bioconductor.org
Using Bioconductor version 3.0 (BiocInstaller 1.16.1), R version 3.1.2.
Installing package(s) 'ggtree'
Warning message:
package 'ggtree' is not available (for R version 3.1.2)
Please do not install packages 'by hand', this will lead to corrupt installations that are then very tedious to debug. Use biocLite(). If you must have a devel package 'now', then use the appropriate version of R and Bioconductor as indicated by the link provided by Jim MacDonald.
You can't install a devel package using the current release version of R. You have to use R-devel.
http://bioconductor.org/developers/how-to/useDevel/
Now you can use biocLite("ggtree") in R version 3.2.0 to install the ggtree package.
You can also use the following command to install it:
install.packages("ggtree", repos = "http://www.bioconductor.org/packages/devel/bioc", type = "source")If it throw error for Bioconductor dependencies, use biocLite to install those dependent pkgs.
Please do not install packages 'by hand', this will lead to corrupt installations that are then very tedious to debug. Use biocLite(). If you must have a devel package 'now', then use the appropriate version of R and Bioconductor as indicated by the link provided by Jim MacDonald.
totally agree.