News:new package `ggtree` in devel branch
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Guangchuang Yu ★ 1.2k
@guangchuang-yu-5419
Last seen 8 months ago
China/Guangzhou/Southern Medical Univer…

This package is designed for viewing and annotating phylogenetic tree.

 

Please check out the vignettes: http://www.bioconductor.org/packages/3.1/bioc/vignettes/ggtree/inst/doc/ggtree.html

 

any comments are welcome.

ggtree phylogenetic News • 5.5k views
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@dawid-g-nowak-6790
Last seen 12 months ago
United States

Hi,

I was trying to install you package: 'ggtree' and getting all the time the warning that package 'ggtree' is not available (for R version 3.1.2). Any clue what is going on?

Thanks,

Dawid

-------

 source("http://bioconductor.org/biocLite.R")
biocLite("ggtree")

BioC_mirror: http://bioconductor.org
Using Bioconductor version 3.0 (BiocInstaller 1.16.1), R version 3.1.2.
Installing package(s) 'ggtree'
Warning message:
package 'ggtree' is not available (for R version 3.1.2) 
 

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You can't install a devel package using the current release version of R. You have to use R-devel.

http://bioconductor.org/developers/how-to/useDevel/

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Now you can use biocLite("ggtree") in R version 3.2.0 to install the ggtree package.

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You can also use the following command to install it:

install.packages("ggtree",
				 repos = "http://www.bioconductor.org/packages/devel/bioc",
				 type  = "source")

 

If it throw error for Bioconductor dependencies, use biocLite to install those dependent pkgs.

 

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Please do not install packages 'by hand', this will lead to corrupt installations that are then very tedious to debug. Use biocLite(). If you must have a devel package 'now', then use the appropriate version of R and Bioconductor as indicated by the link provided by Jim MacDonald.

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totally agree.

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@remitournebize-7099
Last seen 6.7 years ago
France

Hello,

This is a neat package! Is it possible by any mean to plot onto tree branches points at given times (not simply at the nodes)?

Thank you for this great job, hope the package will be stable released soon,

Rémi

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Can you explain more clear? I don't get your idea.

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