Hello, I'm building docker image containing the mzR package with both centos:latest and r-base:latest (which is also used by Bioconductor docker images) as base images.

Both installation of package ‘mzR’ had non-zero exit status and doesn't finish compiling at all. I'm not using the Bioconductor docker images to keep image sizes to a minimum.

Below is the debian build Dockerfile

## start with the Docker 'base R' Debian-based image
FROM r-base:latest 

## Remain current
RUN apt-get update -qq \ 
&& apt-get dist-upgrade -y 
RUN apt-get update -qq \ 
&& apt-get install -y \ 
curl \ 
libnetcdf-dev \ 
libxml2-dev 

# Setup default cran repo 
RUN echo "r <- getOption('repos'); r['CRAN'] <- 'http://cran.us.r-project.org'; options(repos = r);" > ~/.Rprofile 

# This installs other R packages under Bioconductor 
RUN Rscript -e "source('https://bioconductor.org/biocLite.R'); biocLite('mzR')"

Here is the buildlog: http://pastebin.com/gWvBjN1N

Below is the centos build Dockerfile

FROM centos:centos7 
# Update System Image and install EPEL 
RUN \ yum update -y && \ 
yum upgrade -y && \ 
yum install -y epel-release 

# Install R 
RUN \ 
yum install -y R 

#install additional tools and library prerequisites 
RUN \ 
yum install -y netcdf-devel libxml2-devel 

# Setup default cran repo 
RUN echo "r <- getOption('repos'); r['CRAN'] <- 'http://cran.us.r-project.org'; options(repos = r);" > ~/.Rprofile 

# This installs other R packages under Bioconductor 
RUN Rscript -e "source('https://bioconductor.org/biocLite.R'); biocLite('mzR')" 

CMD "/bin/bash"

This build ends with an internal compiler error.