updated 4.3 years ago by
Wolfgang Huber
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written 4.3 years ago by
Mathieu Gendarme
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updated 5.1 years ago by
Kasper Daniel Hansen
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written 5.1 years ago by
Goku
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Comment: Visualization of negative log CPM values
by
Gordon Smyth
47k
Sorry, but some of the things you say are not correct.
> compound B has 2 statistically significant genes that are up-regulated
No, there…
Comment: Visualization of negative log CPM values
by
Sabiha
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10
@atpoint OK, are you referring to the `log2(cpm+1)` or `log2(tpm+1)`
Comment: Visualization of negative log CPM values
by
Sabiha
▴
10
@gordonsmyth noted. Related to the graphs above, the table below is the output from `limma`, and compound B has 2 statistically significant…
Comment: Visualization of negative log CPM values
by
Gordon Smyth
47k
> negative scale might perhaps indicate gene is too low to be really expressed.
Yes, negative logCPMs do mean that the gene is expressed a…
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