updated 3.5 years ago by
Nicolas Servant
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written 3.6 years ago by
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Comment: VST transformation and covariates in the TCGA TARGET GTEx dataset
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Michael Love
34k
If this is taking too long, you can run it on a subsample (e.g. hundreds of samples) to identify parameters for the VST, and then apply it …
Comment: "full model matrix is less than full rank"
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fernandogs97
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0
Hello ATpoint, thank you very much for your fast and helpful response, finally I corrected the error by changing the separator, instead of …
Comment: unable to load shared object Rsamtools.dll':
by
Mike Smith
★
5.1k
Can you include the command you're running (I guess it's `BiocManager::install("Rsamtools", type = "source")` )? It would also be useful to…
Comment: unable to load shared object Rsamtools.dll':
by
franck.richard
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0
Finally, I only encounter this problem with Rsamtools. It works fine with the other packages.
Thank you for your help!
Comment: Unique GPos taking into account mcols
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maltethodberg
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140
Yes, I managed to find those functions via the VariantAnnotation package. The "Quad" versions are very handy for matching seqnames/pos/effe…
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