Question: Are there any bioconductor github mirrors for data packages?
gravatar for MarcinKosiński
2.9 years ago by
MarcinKosiński0 wrote:

I am an R software developer publishing my packages on bioconductor.
Since bioconductor software developmnet requires SVN for code versioning I had to move my contribution from GitHub to bioconductor's SVN. Now I am trying (after this information to synchronize bioconductor's SVN repository for my package with my clone on a GitHub. 

It is somehow working for my software packages ( but it is not working for my data packages ( I have found a bioconductor-mirror for my software package but I can not found such mirror for my data package RTCGA.clicnial. I know that the data package development is splitted to 2 different repositories, where one has only documentation and code, and another has only data included in it, so maybe I should start looking with other names for that repository?

For example for RTCGA.clinical correspoding SVN urls for this data package are 

Does anyone know are there any mirrors for data packages on github?

ADD COMMENTlink modified 2.9 years ago by Dan Tenenbaum ♦♦ 8.2k • written 2.9 years ago by MarcinKosiński0
gravatar for Dan Tenenbaum
2.9 years ago by
Dan Tenenbaum ♦♦ 8.2k
United States
Dan Tenenbaum ♦♦ 8.2k wrote:

There are no github mirrors for experiment data packages.

ADD COMMENTlink written 2.9 years ago by Dan Tenenbaum ♦♦ 8.2k

Is there a way to synchronize data package github repo with bioconductor's svn repo?

ADD REPLYlink written 2.9 years ago by MarcinKosiński0


This support site is for Bioconductor end-users. You should really ask this kind of question on the bioc-devel mailing list. That way you'll reach the broad community of Bioconductor developers.



ADD REPLYlink written 2.9 years ago by Hervé Pagès ♦♦ 13k
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