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Question: Are there any bioconductor github mirrors for data packages?
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gravatar for MarcinKosiński
2.0 years ago by
Poland
MarcinKosiński0 wrote:

I am an R software developer publishing my packages on bioconductor.
Since bioconductor software developmnet requires SVN for code versioning I had to move my contribution from GitHub to bioconductor's SVN. Now I am trying (after this information https://www.bioconductor.org/developers/how-to/git-mirrors/) to synchronize bioconductor's SVN repository for my package with my clone on a GitHub. 

It is somehow working for my software packages (https://github.com/RTCGA/RTCGA) but it is not working for my data packages (https://github.com/RTCGA/RTCGA.clinical). I have found a bioconductor-mirror for my software package https://github.com/Bioconductor-mirror/RTCGA but I can not found such mirror for my data package RTCGA.clicnial. I know that the data package development is splitted to 2 different repositories, where one has only documentation and code, and another has only data included in it, so maybe I should start looking with other names for that repository?

For example for RTCGA.clinical correspoding SVN urls for this data package are
https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/RTCGA.clinical/
https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/data_store/RTCGA.clinical/ 

Does anyone know are there any mirrors for data packages on github?

ADD COMMENTlink modified 2.0 years ago by Dan Tenenbaum ♦♦ 8.2k • written 2.0 years ago by MarcinKosiński0
1
gravatar for Dan Tenenbaum
2.0 years ago by
Dan Tenenbaum ♦♦ 8.2k
United States
Dan Tenenbaum ♦♦ 8.2k wrote:

There are no github mirrors for experiment data packages.

ADD COMMENTlink written 2.0 years ago by Dan Tenenbaum ♦♦ 8.2k

Is there a way to synchronize data package github repo with bioconductor's svn repo?

ADD REPLYlink written 2.0 years ago by MarcinKosiński0

Hi,

This support site is for Bioconductor end-users. You should really ask this kind of question on the bioc-devel mailing list. That way you'll reach the broad community of Bioconductor developers.

Thanks,

H.

ADD REPLYlink written 2.0 years ago by Hervé Pagès ♦♦ 13k
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