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bioc-devel
•
reset
1
vote
2
replies
826
views
Segmentation Fault with development versions of R, Bioconductor, and DropletUtils when processing output of CellRanger 3.0.2
DropletUtils
Bioc-devel
3.8 years ago
Matthew Thornton
▴ 350
1
vote
5
replies
726
views
[DEVELOPMENT] Trying to use development version of Bioconductor, needs R 3.6?...
developers
bioc-devel
4.2 years ago
Casper Peters
• 0
0
votes
2
replies
827
views
Circular dependencies between data and software packages: how best to avoid
developers
bioc-devel
package development
circular dependencies
updated 4.3 years ago by
shepherl
3.4k • written 4.3 years ago by
Tim Triche
★ 4.2k
3
votes
1
reply
1.5k
views
News:
Latin American BioC Developers Workshop 2018
bioconductor
developers
bioc-devel
News
4.8 years ago
Alejandro Reyes
★ 1.8k
6
votes
3
replies
1.8k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 5.2 years ago by
Lluís Revilla Sancho
▴ 700 • written 5.2 years ago by
Paul Brennan
▴ 10
0
votes
0
replies
1.6k
views
Tutorial:
Using Subversion to update /devel branch of Bioconductor package
subversion
bioc-devel
package development
usedevel
Tutorial
5.5 years ago
Bohdan Khomtchouk
▴ 10
3
votes
2
replies
810
views
Changing lead developer for existing package
developers
bioc-devel
updated 5.8 years ago by
Martin Morgan
25k • written 5.8 years ago by
mlbendall
• 0
2
votes
8
replies
2.5k
views
Unable to load/install rtracklayer (v1.33.2) on OS X (possibly SSL-related?)
rtracklayer
bioc-devel
ssl
openssl
updated 6.7 years ago by
Michael Lawrence
11k • written 6.7 years ago by
Peter Hickey
▴ 630
1
vote
3
replies
1.1k
views
Are there any bioconductor github mirrors for data packages?
software
bioc-devel
developers
R
updated 7.2 years ago by
Dan Tenenbaum
★ 8.2k • written 7.2 years ago by
MarcinKosiński
• 0
3
votes
6
replies
1.5k
views
Bioconductor Docker Development container
docker
bioc-devel
updated 7.7 years ago by
Dan Tenenbaum
★ 8.2k • written 7.7 years ago by
Nathan Sheffield
▴ 10
5
votes
3
replies
1.2k
views
BiocCheck: REQUIRED: vignette sources in vignettes/ directory (for custom vignettebuilder)
package
bioconductor
bioc-devel
developers
7.7 years ago
flying-sheep
▴ 10
0
votes
2
replies
1.6k
views
Error reading vcf converted from bed file
readvcf
plink
file conversion
bed
bioc-devel
7.8 years ago
mjsduncan
• 0
0
votes
1
reply
1.7k
views
installation of GenomicRanges package in Rdevel fails
installation
bioc-devel
updated 8.3 years ago by
Martin Morgan
25k • written 8.3 years ago by
Tiphaine Martin
▴ 40
1
vote
1
reply
1.4k
views
Using hash packages with package:rtracklayer, GenomicRanges, Gviz, IRanges, biomaRt conflict
software error
bioc-devel
updated 8.3 years ago by
Martin Morgan
25k • written 8.3 years ago by
Tiphaine Martin
▴ 40
14 results • Page
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Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
I felt that my way of analyzing this data set was a bit unfortunate. I was not involved in the experimental design myself and am now trying…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
For tissue T1 and each time point, each replicate corresponds to a single plant. For tissue T2, we actually had to sample 5 plants per rep…
Answer: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
> Due to the high degree of heterozygosity of the plants used for the experiment, we thought it best to pool the same tissue under the same…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
How many plants are used for each of the biological replicate samples? One plant or a few?
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
Yes you are right, we have 24 RNA-seq libraries in total. The replicates come from the same population of plants, but independent from tho…
Votes
DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
Comment: MA plot
Comment: MA plot
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