News:Ensembl 83 is out!
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amonida ▴ 20
@amonida-7119
Last seen 4.4 years ago
United Kingdom

We are pleased to announce that the latest Ensembl update (e!83) has
been released:

http://www.ensembl.org/

If you are using biomaRt, you can change your host to access our most recent data (With R 2.2 and Bioconductor version 3.1):

ensembl_mart_83 <- useEnsembl(biomart=“ensembl")

  • Ensembl Genes 83
    • Retirement of the "flagged variants" (http://www.ensembl.org/Help/Glossary?id=533)
    • Renamed "Phase" attribute to "start phase" and added new "end phase" attribute to structure and sequence sections.
    • Human assembly updated from GRCh38.p3 to GRCh38.p5
  • Ensembl Variation 83
    • Retirement of the genotype and strain data. This will result in the removal of the "Strain Variants", "Strain - Other Variants (Indels, Multiple Nucleotide Polymorphisms)" and "Compare Strain genotypes" attribute sections.
    • Retirement of the "flagged variants" (http://www.ensembl.org/Help/Glossary?id=533)
    • Human assembly updated from GRCh38.p3 to GRCh38.p5
  • Ensembl Regulation 83
  • Vega 63
    • Renamed "Phase" attribute to "start phase" and added new "end phase" attribute to structure and sequence sections.
    • Human assembly updated from GRCh38.p3 to GRCh38.p5

 

A complete list of the changes in release 83 can be found at
http://www.ensembl.org/info/website/news.html

For the latest news from the Ensembl project visit our blog at
http://www.ensembl.info

The release 83 blog post can be viewed here:
http://www.ensembl.info/blog/2015/12/08/ensembl-83-has-been-released/

The e83 webinar is planned for Wednesday 16th Dec at 16:00 GMT, please
register using the following URL. Registration is free.
http://www.ebi.ac.uk/training/events/2015/ensembl-release-83-webinar

Best regards,
Amonida
--
Amonida Zadissa, PhD
Ensembl Production
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
UK

ensemble mart ensembl biomart ensembl release News • 1.8k views
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