Bioconductor Ensembl release

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ensembldb ensembl release rnaseq salmon tximport

5.6 years ago emmak ▴ 20

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txtimport deseq2 ensembl release

updated 6.5 years ago by James W. MacDonald 63k • written 6.5 years ago by jarod_v6@libero.it ▴ 40

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ensembl biomart ensembl release ensembl mart News

7.0 years ago Thomas Maurel ▴ 790

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ensembl biomart release85 ensembl release mart News

7.2 years ago Thomas Maurel ▴ 790

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ensembl mart release84 biomart ensembl release News

updated 7.4 years ago by arielpaulson ▴ 20 • written 7.6 years ago by Thomas Maurel ▴ 790

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ensemble mart ensembl biomart ensembl release News

7.8 years ago amonida ▴ 20

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Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by James W. MacDonald 63k

I should also point out that you can find this out by yourself by going to [ensembl][1], clicking on the Biomart link, and then scrolling t…

Answer: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by James W. MacDonald 63k

It's my understanding that the archived Biomart data are not complete, which is likely why you cannot get sequences. But you apparently jus…

Comment: ComBat_seq function in sva package does not return a matrix by Federico ▴ 10

Thanks for your help, problem solved :)

Answer: ComBat_seq function in sva package does not return a matrix by ATpoint ★ 3.4k

That happens if your `x` is a data.frame rather than a matrix. It is listed under the Q&A section in https://github.com/zhangyuqing/ComBat-…

Answer: error running exp2grn by Fabricio Almeida-Silva ▴ 40

Hi, Adriana. It seems like the gene IDs you specified in `Host13tfs$Protein.ID` do not match any gene IDs in the row names of your expr…

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ComBat_seq function in sva package does not return a matrix

Answer: ComBat_seq function in sva package does not return a matrix

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