Showing : ensembl release • reset
5
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9
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1.7k
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Correct version of EnsDb.Hsapiens for ensembl transcriptome
ensembldb ensembl release rnaseq salmon tximport
3.5 years ago emmak ▴ 20
0
votes
2
replies
913
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Txtimport for kallisto on hg38 v87
txtimport deseq2 ensembl release
updated 4.3 years ago by 57k • written 4.3 years ago by ▴ 40
1
vote
1
reply
687
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News: Ensembl release 86 is out!
ensembl biomart ensembl release ensembl mart News
4.8 years ago Thomas Maurel ▴ 790
1
vote
0
replies
642
views
News: Ensembl release 85 is out!
ensembl biomart release85 ensembl release mart News
5.0 years ago Thomas Maurel ▴ 790
4
votes
9
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1.7k
views
News: Ensembl release 84 is out!
ensembl mart release84 biomart ensembl release News
updated 5.3 years ago by ▴ 20 • written 5.4 years ago by ▴ 790
0
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0
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1.0k
views
News: Ensembl 83 is out!
ensemble mart ensembl biomart ensembl release News
5.7 years ago amonida ▴ 20
6 results • Page 1 of 1
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Answer: Wrong stdev.unscaled from contrasts.fit when lmFit contains a weights matrix by Gordon Smyth 43k
First, the design matrix and contrast you have created are extremely artificial and I cannot see how they could be used for any real analys…
Answer: Help With TCGAbiolinks package by Kevin Blighe 3.2k
Hi Daniela, The raw counts should be contained in the `HGNC.exp` object under the '`raw_count`' assay: HNSC.exp class: RangedSum…
Comment: Problems with installation of 'phyloseq by Kevin Blighe 3.2k
Great, thanks for the feedback, Ina
Comment: featureCounts - paired-end data by Wei Shi ★ 3.3k
You need to specify `-p` and `--countReadPairs` to count fragments instead of reads. The value provided to the `-t` option is typically `ex…
Comment: Problems with installation of 'phyloseq by Ina • 0
Hello, I used the code to install 'GenomeInfoDbData' from Bioconductor- which worked. Then I tried to install 'phyloseq' from Bioconductor…
Votes
Answer: Apparent Ensembl - Entrez gene mis-match in org.Mm.eg.db.
Answer: Macbook M1 install genefilter failed
Comment: derfinder model.matrix with limma or single base-level F-statistics analysis
Answer: derfinder model.matrix with limma or single base-level F-statistics analysis
A: DESeq2: multiple conditions design -- How to select subset comparisons from the
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