Question: Prevent biocLite() from asking to update packages every time it's used
0
gravatar for jacorvar
3.6 years ago by
jacorvar40
European Union
jacorvar40 wrote:

Dear BioC,

Every time I install a package with the biocLite() function, once the package has been installed, it asks me if I want to update all, some or none of the packages already installed.

I would appreciate if someone tells me a way to prevent that function from  asking it every time I use it.

 

Thanks a lot

ADD COMMENTlink modified 3.6 years ago by Martin Morgan ♦♦ 24k • written 3.6 years ago by jacorvar40

Any reason why you don't accept the updates? It is highly recommended that you accept them (by choosing the "all" option). That way you'll kill 2 birds with the same stone: biocLite() won't ask you again and you will keep your installation up to date.

H.

ADD REPLYlink written 3.6 years ago by Hervé Pagès ♦♦ 14k
Answer: Prevent biocLite() from asking to update packages every time it's used
0
gravatar for Martin Morgan
3.6 years ago by
Martin Morgan ♦♦ 24k
United States
Martin Morgan ♦♦ 24k wrote:

After library(BiocInstaller), see ?biocLite and suppressUpdates.

ADD COMMENTlink written 3.6 years ago by Martin Morgan ♦♦ 24k

Thanks Martin! It worked!

ADD REPLYlink written 3.4 years ago by jacorvar40
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