I am working on plant dataset which is a close relative of Arabidopsis.
I performed differential expression analysis using an edgeR and found significant DE genes. I would like to identify associated GO terms.
I have a transcript as a Scaffold, and not the ENTREZ ID. I am just wondering whether it is possible to perform GO annotation and gene set testing in R for plant dataset.
If not, could you please suggests a different tool.
Thanks in advance for your help.