I want to use A clustering to find DMRs, with Aclust package. My problem is that Aclust uses IlluminaHumanMethylation450k.db package, which is deprecated, therefore when I'm trying to use a command:
ordered = order.betas.by.chrom.location(bVals)
I get following error (partially it's in Polish, but the most important part is visivle I believe):
Error in as.list(IlluminaHumanMethylation450kCHR37[probe.vec]) : błąd podczas obliczania argumentu 'x' przy wybieraniu metody dla funkcji 'as.list': Error: object 'IlluminaHumanMethylation450kCHR37' not found
Does anyone have some ideas, advices how to solve this problem? I am quite determined to use Aclust, I know there is also Python version, but I assume there may be similar problems.
Thanks in advance,