Bioconductor Aclust

Showing : aclust • reset

0

votes

5

replies

2.2k

views

illuminahumanmethylation450k.db aclust methylation annotation illumina

written 8.8 years ago by aagata.szymanek • 0

0

votes

9

replies

2.9k

views

Aclust Aclustering Rstudio Clusters

updated 9.8 years ago by Nitish Kumar Mishra ▴ 40 • written 9.8 years ago by Lillyhchen ▴ 10

2 results • Page 1 of 1

Recent ...

Replies

Comment: parameters of filterByExpr by caroline.zanchi ▴ 10

Ah yes sorry :) But then I still do not understand why is it that on the plot I attached, the gene definitely has non-0 counts in less than…

Answer: Typo in the help of lmFit() by Gordon Smyth 52k

Thanks for the heads-up. > The _Details_ in the documentation of lmFit() still says that the default correlation is 0.75 Yes, you're righ…

Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by caroline.zanchi ▴ 10

Thank you ! ![enter image description here][1] In the end I did ```r rn2 <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "GENENAME"…

Answer: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin by James W. MacDonald 68k

The obvious solution is to use cloud computing, which is likely cheaper than getting more RAM for your computer.

Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by James W. MacDonald 68k

``` library(org.Dm.eg.db) rn <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "SYMBOL","FLYBASE") ## ensure no NA values get propaga…

Votes

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

Awards • All