Ensembl release 86 is out!

News:Ensembl release 86 is out!

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Thomas Maurel ▴ 800

@thomas-maurel-5295

Last seen 14 months ago

United Kingdom

We are pleased to announce that the new Ensembl marts for release 86 are now live on www.ensembl.org.

If you are using biomaRt, you can change your host to access our most recent data:

ensembl_mart_86 <- useEnsembl(biomart=“ensembl")

Ensembl Genes 86
Mouse Genes 86
- New gene mart containing the 16 Mouse strains
Ensembl Variation 86
Ensembl Regulation 86
Vega 66

A complete list of the changes in release 86 can be found at http://www.ensembl.org/info/website/news.html

Best Regards,

Thomas

ensembl biomart ensembl release ensembl mart News • 1.2k views

ADD COMMENT • link 7.6 years ago Thomas Maurel ▴ 800

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Hi Thomas,

There have been a couple of questions in the last few days regarding problems with the functionality for finding orthologous genes (e.g. Error in biomaRt User Guide example Task 11 and Biomart getLDS error).

Currently I can't get this to work using either the getLDS() function in biomaRt, or via the web interface. Do you know if this is something that was changed intentionally - the release notes mention that the orthologue tables have changed, but I've no idea if that impacts the mart interface.

Cheers,

Mike

ADD REPLY • link 7.6 years ago Mike Smith ★ 6.5k

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