Corrupt Database Error When Loading qvalue() Package
1
0
Entering edit mode
tah340 • 0
@tah340-11889
Last seen 8.1 years ago

Hey everybody,

I'm trying to use the qvalue() function, but I'm getting this error message when I try to load the "qvalue" package: 

Error in get(method, envir = home) : 
  lazy-load database '/usr/local/lib/R/3.3/site-library/qvalue/R/qvalue.rdb' is corrupt
In addition: Warning messages:
1: In .registerS3method(fin[i, 1], fin[i, 2], fin[i, 3], fin[i, 4],  :
  restarting interrupted promise evaluation
2: In get(method, envir = home) :
  restarting interrupted promise evaluation
3: In get(method, envir = home) : internal error -3 in R_decompress1
Error: package or namespace load failed for ‘qvalue’

I'm guessing there's an issue with how the package was installed, even though I'm pretty sure I used the right lines:

source('https://bioconductor.org/biocLite.R')
biocLite("qvalue")
library("qvalue")

I tried uninstalling (through R Studio - remove.packages() ) and reinstalling, but that didn't work. I've had other packages from Bioconductor work, and so I don't know why I'm having issues with this one specifically.

Additional info: Version 3.3.1. Fairly new to R.

Thanks,

Taymor

qvalue library software error package installation package updates • 3.2k views
ADD COMMENT
1
Entering edit mode
@vincent-j-carey-jr-4
Last seen 3 months ago
United States

Did you fully terminate your R/Rstudio session before restarting and issuing library("qvalue")?  Typically the R_decompress1 error occurs when inconsistent package images are in use/installed.

http://stackoverflow.com/questions/10373098/error-in-fetchkey-internal-error-3-in-r-decompress1

0
Entering edit mode

Hi Vincent,

That worked! Thanks a lot :)

T

ADD REPLY

Login before adding your answer.

Traffic: 395 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6