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qvalue
•
reset
0
votes
0
replies
81
views
Storey's qvalue and interpreting p-value histogram
qvalue
11 weeks ago
mikhael.manurung
▴ 240
0
votes
0
replies
186
views
installation of package 'qvalue' had non-zero exit status (
qvalue
4 months ago
natasha.tilich
• 0
4
votes
6
replies
454
views
Question about the usage of Package, qvalue
statistical significance
p-value
q-value
FDR
qvalue
2.4 years ago
manozawa
▴ 10
1
vote
4
replies
1.4k
views
Issue with qvalue function: Error in smooth.spline(lambda, pi0, df = smooth.df) : missing or infinite values in inputs are not allowed
qvalue
2.6 years ago
anamaria
▴ 10
9
votes
5
replies
2.5k
views
Finding DE genes from RNA-seq data
edgeR
pvalue
qvalue
fpkm
differential gene expression
updated 3.6 years ago by
Steve Lianoglou
13k • written 3.6 years ago by
Harrisonesmith
• 0
0
votes
1
reply
3.0k
views
Problem installing dartR: package 'qvalue' is not available for R version 3.5.1
qvalue
dartR
updated 3.6 years ago by
Martin Morgan
25k • written 3.6 years ago by
mumpalsson
• 0
2
votes
3
replies
5.6k
views
Package is not available for R version 3.5.0
qvalue
NBPSeq
updated 3.9 years ago by
Gordon Smyth
45k • written 3.9 years ago by
Gary
▴ 20
6
votes
2
replies
720
views
Anomal pvalue distribution and qvalue calculation
qvalue
pvalue histogram
multiple testing correction
updated 3.9 years ago by
Nikos Ignatiadis
▴ 170 • written 3.9 years ago by
oliver.selmoni
▴ 10
1
vote
7
replies
992
views
EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
edge
qpcr
qvalue
5.2 years ago • updated 4.3 years ago
joe.d.moore.ii
• 0
1
vote
5
replies
1.1k
views
Hm... segfault when using qvalue 1.39.1, has anyone else encountered this?
qvalue
segfault
7.6 years ago • updated 4.3 years ago
Leonardo Collado Torres
▴ 980
5
votes
2
replies
3.3k
views
qvalue package throws error when used on any p-values but hedenfalk example
qvalue
updated 4.3 years ago by
Storey, John D.
▴ 80 • written 4.3 years ago by
ilikescience1
▴ 30
1
vote
2
replies
703
views
qvalues lower than pvalues
qvalue
4.9 years ago
AR3513
• 0
0
votes
1
reply
1.1k
views
P-value distribution acceptable for qvalue
qvalue
pvalue histogram
updated 4.9 years ago by
Laurent Gatto
1.5k • written 4.9 years ago by
kerrypop
▴ 30
1
vote
1
reply
1.8k
views
Q value obtained from QValue package is lower than P value?
qvalue
pvalue
r
multiple comparisons
updated 5.3 years ago by
Storey, John D.
▴ 80 • written 5.3 years ago by
tombernardryan
▴ 50
1
vote
2
replies
1.2k
views
Corrupt Database Error When Loading qvalue() Package
qvalue
library
software error
package installation
package updates
5.5 years ago
tah340
• 0
1
vote
2
replies
2.7k
views
clusterProfiler : How works the q-value filtering ? What is a good cutoff ? Is this like an FDR ?
clusterprofiler
qvalue
updated 5.6 years ago by
Guangchuang Yu
★ 1.2k • written 5.6 years ago by
ZheFrench
▴ 30
55
votes
8
replies
46k
views
conceptual question about FDR, FDR adjusted p-value and q-value
fdr
qvalue
updated 5.6 years ago by
Gordon Smyth
45k • written 9.4 years ago by
Jack Luo
▴ 420
1
vote
2
replies
4.7k
views
Error in dyn.load(file, DLLpath = DLLpath, ...) :
R
qvalue
updated 6.0 years ago by
Martin Morgan
25k • written 6.0 years ago by
HS
▴ 10
1
vote
2
replies
961
views
Cannot re-create q-values from the p-values in the DiffTable.
cummeRbund
pvalue
adjusted pvalue
qvalue
updated 6.3 years ago by
James W. MacDonald
59k • written 6.3 years ago by
Sameet Mehta
▴ 30
0
votes
4
replies
1.8k
views
Unable to load qvalue package
qvalue
6.4 years ago
lgvazdela
• 0
4
votes
5
replies
5.1k
views
Unable to use qvalue. Estimated pi0 is <=0
qvalue
usage qvalue
updated 6.5 years ago by
Gordon Smyth
45k • written 6.5 years ago by
robandclara
• 0
2
votes
6
replies
1.0k
views
Problem testing qvalue 2.0.0
qvalue
updated 6.8 years ago by
Storey, John D.
▴ 80 • written 6.8 years ago by
tillea
• 0
2
votes
5
replies
2.2k
views
How to use q.value cutt off in "decideTests" function for RNAseq differential expression analysis
rnaseq
decideTests
limma
qvalue
6.9 years ago
anver
• 0
2
votes
10
replies
1.9k
views
Package qvalue - can it be installed without TCL-TK support?
qvalue
qvalue
updated 7.1 years ago by
Storey, John D.
▴ 80 • written 8.0 years ago by
Giuseppe Gallone
▴ 170
0
votes
1
reply
1.1k
views
loading qvalue library causes R to abort
qvalue
qvalue
updated 7.9 years ago by
Dan Tenenbaum
★ 8.2k • written 7.9 years ago by
Guest User
★ 12k
0
votes
7
replies
2.9k
views
Q-values way smaller than P-values! Is that kosher?
qvalue
qvalue
updated 8.3 years ago by
Michael Love
36k • written 8.3 years ago by
Joshua Banta
▴ 30
0
votes
3
replies
1.7k
views
install qvalue
qvalue
qvalue
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
Guest User
★ 12k
0
votes
0
replies
730
views
3 empty plots when I use qvalue
qvalue
qvalue
8.8 years ago
Emma Timmins-Schiffman
▴ 10
0
votes
5
replies
1.0k
views
Bioconductor's qvalue package not working on Macs!
qvalue
qvalue
updated 9.7 years ago by
Wolfgang Huber
13k • written 9.7 years ago by
Josh B
▴ 30
0
votes
4
replies
7.2k
views
DESeq adjusted pvalue calculation / filtering data
Sequencing
Organism
qvalue
DESeq
Sequencing
Organism
qvalue
DESeq
updated 10.5 years ago by
Naomi Altman
★ 6.0k • written 10.5 years ago by
Markus Grohme
▴ 20
0
votes
0
replies
673
views
qvalue package:pFDR generation from pvalues
qvalue
qvalue
11.1 years ago
viritha kaza
▴ 580
0
votes
9
replies
2.4k
views
unable to install qvalue..
qvalue
qvalue
updated 11.2 years ago by
Martin Morgan
25k • written 11.2 years ago by
Saurabh Bundela
▴ 30
0
votes
0
replies
764
views
P>1 (edgeR and sage.test)
SAGE
qvalue
SAGE
qvalue
11.9 years ago
Naomi Altman
★ 6.0k
0
votes
3
replies
2.9k
views
Running R without X11?
webbioc
qvalue
webbioc
qvalue
updated 13.7 years ago by
ALok
▴ 170 • written 13.7 years ago by
Amy Johnson
▴ 40
0
votes
4
replies
907
views
observations on affyprobeminer
GO
rat2302
cdf
affy
qvalue
GO
rat2302
cdf
affy
qvalue
updated 14.0 years ago by
Hongfang Liu
▴ 10 • written 14.0 years ago by
Mark W Kimpel
▴ 830
0
votes
3
replies
2.4k
views
SAM and qvalue
qvalue
qvalue
updated 15.5 years ago by
Holger Schwender
▴ 900 • written 15.5 years ago by
Nicolas Servant
▴ 260
0
votes
0
replies
792
views
blocking in limma gives an estimability problem
GO
hgu95av2
Ruuid
multtest
affy
graph
limma
RBGL
qvalue
Category
affyio
GO
hgu95av2
15.9 years ago
Pedro López Romero
▴ 360
1
vote
1
reply
1.1k
views
adjPval and qvalue
qvalue
maanova
qvalue
maanova
updated 16.2 years ago by
James W. MacDonald
59k • written 16.2 years ago by
sabrina.shao
▴ 220
0
votes
0
replies
883
views
affymetrix in maanova, code
qvalue
maanova
qvalue
maanova
16.4 years ago
Morten
▴ 300
0
votes
0
replies
1.1k
views
qvalue ( ) ERROR: The estimated pi0 <= 0....
qvalue
qvalue
17.5 years ago
SAURIN
★ 1.1k
0
votes
1
reply
598
views
Limma background subtraction etc
limma
qvalue
limma
qvalue
updated 18.6 years ago by
Gordon Smyth
45k • written 18.6 years ago by
Jason Skelton
▴ 510
41 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
karenserrano
• 0
Hi Johannes, Could I request the same EnsDb creation for Medicago truncatula? Thank you very much, Karen
Answer: EnrichGO not working with db created from annotationhub
by
Guido Hooiveld
★ 3.2k
Did you notice the first message that was returned after you ran `enrichGO()`? Thus: `--> No gene can be mapped....` This basically means…
Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
by
ksong
• 0
Hello my friends, I have exactly the same issue. May I ask if you have already solve this problem? I have tried `library(BiocParallel) regi…
Comment: cellCounts() function floating point error
by
Wei Shi
★ 3.3k
Yes we are currently working on generating a small example for cellCounts.
Comment: Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
by
ksong
• 0
Hi Dr Sudbery, yes I found looking at the coverage in IGV helps a lot. I did find some differences between CDS and UTR and between samples.…
Votes
Comment: Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
C: Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with o
Comment: Diffbind dba$binding slot finding Chr21 for an MM10 dataset
Answer: Handling NA values in limma's voom design matrix
Answer: Handling NA values in limma's voom design matrix
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Gordon Smyth
45k
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to
Julie Zhu
★ 4.3k
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to
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15k
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James W. MacDonald
59k
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to
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★ 27k
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