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library
•
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0
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4
replies
1.8k
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Normalization by variance stabilizing transformation VST
library
composition
vst
DESeq2
Normalization
18 months ago
kristoffersandas
• 0
0
votes
1
reply
733
views
Couldnt find getAE and ae2bioc?
getAE
ae2bioc
bioconductor
packages
library
updated 3.7 years ago by
Mike Smith
★ 6.0k • written 3.7 years ago by
kodherif
• 0
0
votes
1
reply
2.2k
views
R Session Aborted; R ecountered a fatal error while loading openCyto
opencyto
fatal error
library
updated 5.9 years ago by
Jiang, Mike
★ 1.3k • written 5.9 years ago by
Maria
• 0
3
votes
3
replies
1.2k
views
Fail to load "MotifDb" package
MotifDb
library
load
updated 6.2 years ago by
Paul Shannon
▴ 470 • written 6.2 years ago by
Pengcheng Yang
▴ 60
3
votes
2
replies
2.1k
views
Rqc - envir must be either NULL, a list, or an environment.
software error
bug
library
updated 6.3 years ago by
Welliton de Souza
▴ 70 • written 6.4 years ago by
guus.steeg
▴ 10
0
votes
1
reply
1.1k
views
ALL Library and ALL Data Set error
bioconductor
R
library
software error
ALL library
6.4 years ago
alyssa.ylescu
• 0
1
vote
2
replies
2.0k
views
Corrupt Database Error When Loading qvalue() Package
qvalue
library
software error
package installation
package updates
6.5 years ago
tah340
• 0
1
vote
1
reply
2.7k
views
[Windows 10] 64. Problem installing biocLite due Warning on non writable directory
installation
windows10
not-writable
warning message
library
7.5 years ago
juancaf
• 0
2
votes
2
replies
3.0k
views
Problem with HDF5 and ncdfFlow
installation
dependency
library
hdf5
7.7 years ago
Ulrik Stervbo
▴ 30
1
vote
2
replies
4.3k
views
ICU init failed: U_FILE_ACCESS_ERROR while loading library "VariantAnnotation"
variantannotation
library
error
updated 7.8 years ago by
Valerie Obenchain
★ 6.8k • written 7.8 years ago by
kmu004
▴ 50
3
votes
3
replies
1.2k
views
Using a single R installation with multiple BioConductor library installations - opinions & best practices sought
version
release
library
updated 8.2 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 8.2 years ago by
Malcolm Cook
★ 1.6k
0
votes
1
reply
1.2k
views
Loading library with name in a variable
library
characters
8.5 years ago
Patrick Schorderet
▴ 20
12 results • Page
1 of 1
Recent ...
Replies
Answer: DESeq2 + analysis question for design with uneven time point design
by
Michael Love
40k
I'd recommend reaching out to a local statistician or someone familiar with linear models in R. Unfortunately, I have to reserve my time on…
Answer: Genes with highest differential expression have very low read counts for most ge
by
Michael Love
40k
Have you use `lfcShrink`? Or `results` with `lfcThreshold`? Either of these are recommended for prioritizing DE genes.
Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat
by
Gordon Smyth
47k
Yes, it is obvious that you can use expression measurements as covariates when predicting subject phenotypes. We all do that on occasion. …
Comment: Extract Limma Adjusted Values for Plotting
by
ATpoint
★ 2.9k
Yes, with normalized counts on log2 scale.
Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat
by
Anna
▴ 20
A no I never referred to transcriptomic data when I was talking about "standard procedure" I was referring to the way we analyze longitudin…
Votes
A: Ranges from a fasta file
Answer: NA transcript values in my Txdb
Comment: Interpret plot from DiffBind
Answer: Use with_go along with other filters in getBM function
Answer: Use with_go along with other filters in getBM function
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Martin Morgan
25k
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Hervé Pagès
16k
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Gordon Smyth
47k
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