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library
•
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0
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4
replies
498
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Normalization by variance stabilizing transformation VST
library
composition
vst
DESeq2
Normalization
5 months ago
kristoffersandas
• 0
0
votes
1
reply
376
views
Couldnt find getAE and ae2bioc?
getAE
ae2bioc
bioconductor
packages
library
updated 2.7 years ago by
Mike Smith
★ 5.5k • written 2.7 years ago by
kodherif
• 0
0
votes
1
reply
2.0k
views
R Session Aborted; R ecountered a fatal error while loading openCyto
opencyto
fatal error
library
updated 4.9 years ago by
Jiang, Mike
★ 1.3k • written 4.9 years ago by
Maria
• 0
3
votes
3
replies
974
views
Fail to load "MotifDb" package
MotifDb
library
load
updated 5.2 years ago by
Paul Shannon
▴ 470 • written 5.2 years ago by
Pengcheng Yang
▴ 50
3
votes
2
replies
1.7k
views
Rqc - envir must be either NULL, a list, or an environment.
software error
bug
library
updated 5.3 years ago by
Welliton de Souza
▴ 70 • written 5.3 years ago by
guus.steeg
▴ 10
0
votes
1
reply
927
views
ALL Library and ALL Data Set error
bioconductor
R
library
software error
ALL library
5.3 years ago
alyssa.ylescu
• 0
1
vote
2
replies
1.2k
views
Corrupt Database Error When Loading qvalue() Package
qvalue
library
software error
package installation
package updates
5.5 years ago
tah340
• 0
1
vote
1
reply
2.5k
views
[Windows 10] 64. Problem installing biocLite due Warning on non writable directory
installation
windows10
not-writable
warning message
library
6.5 years ago
juancaf
• 0
2
votes
2
replies
2.7k
views
Problem with HDF5 and ncdfFlow
installation
dependency
library
hdf5
6.7 years ago
Ulrik Stervbo
▴ 30
1
vote
2
replies
3.8k
views
ICU init failed: U_FILE_ACCESS_ERROR while loading library "VariantAnnotation"
variantannotation
library
error
updated 6.7 years ago by
Valerie Obenchain
★ 6.7k • written 6.7 years ago by
kmu004
▴ 40
3
votes
3
replies
1.0k
views
Using a single R installation with multiple BioConductor library installations - opinions & best practices sought
version
release
library
updated 7.2 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 7.2 years ago by
Malcolm Cook
★ 1.6k
0
votes
1
reply
1.1k
views
Loading library with name in a variable
library
characters
7.4 years ago
Patrick Schorderet
▴ 20
12 results • Page
1 of 1
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Comment: performing the differential binding in ChIP-seq
by
ATpoint
★ 1.2k
Cross-posted https://www.biostars.org/p/9524012/#9524012
Comment: Transcript-level differential expression using DESeq2
by
Ekta
• 0
Yes, i tried that. I used salmon bootstraps also for the same RNAseq data to run Swish and performed the Differential transcript expressio…
Comment: how to make a group to apply the data to CAMERA
by
Akira
• 0
Thank you so much for your quick answer!! I will look into them! I appreciate your kind support.
Comment: performing the differential binding in ChIP-seq
by
Bogdan
▴ 640
I am asking the question because we have two sets of ChIP-seq data for a histone mark (lets' say H3K4me1) that were generated with : <> an…
Comment: performing the differential binding in ChIP-seq
by
Bogdan
▴ 640
Thank you. Yes, DiffBind might be a good choice shall we have replicates per sample. Another choice is MA-norm2. Any other well-tested sug…
Votes
Answer: how to make a group to apply the data to CAMERA
Answer: how to make a group to apply the data to CAMERA
Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
Answer: How to best visualize multi-level transcriptomics experiment data?
A: Interpreting results of sample-to-sample PCA/clustering and changing assignment
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