Bioconductor Library

Showing : library • reset

votes

replies

1.8k

views

library composition vst DESeq2 Normalization

18 months ago kristoffersandas • 0

votes

733

views

getAE ae2bioc bioconductor packages library

updated 3.7 years ago by Mike Smith ★ 6.0k • written 3.7 years ago by kodherif • 0

votes

2.2k

views

opencyto fatal error library

updated 5.9 years ago by Jiang, Mike ★ 1.3k • written 5.9 years ago by Maria • 0

votes

replies

1.2k

views

MotifDb library load

updated 6.2 years ago by Paul Shannon ▴ 470 • written 6.2 years ago by Pengcheng Yang ▴ 60

votes

replies

2.1k

views

software error bug library

updated 6.3 years ago by Welliton de Souza ▴ 70 • written 6.4 years ago by guus.steeg ▴ 10

votes

1.1k

views

bioconductor R library software error ALL library

6.4 years ago alyssa.ylescu • 0

vote

replies

2.0k

views

qvalue library software error package installation package updates

6.5 years ago tah340 • 0

vote

2.7k

views

installation windows10 not-writable warning message library

7.5 years ago juancaf • 0

votes

replies

3.0k

views

installation dependency library hdf5

7.7 years ago Ulrik Stervbo ▴ 30

vote

replies

4.3k

views

variantannotation library error

updated 7.8 years ago by Valerie Obenchain ★ 6.8k • written 7.8 years ago by kmu004 ▴ 50

votes

replies

1.2k

views

version release library

updated 8.2 years ago by Hotz, Hans-Rudolf ▴ 400 • written 8.2 years ago by Malcolm Cook ★ 1.6k

votes

1.2k

views

library characters

8.5 years ago Patrick Schorderet ▴ 20

12 results • Page 1 of 1

Recent ...

Replies

Answer: DESeq2 + analysis question for design with uneven time point design by Michael Love 40k

I'd recommend reaching out to a local statistician or someone familiar with linear models in R. Unfortunately, I have to reserve my time on…

Answer: Genes with highest differential expression have very low read counts for most ge by Michael Love 40k

Have you use `lfcShrink`? Or `results` with `lfcThreshold`? Either of these are recommended for prioritizing DE genes.

Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Gordon Smyth 47k

Yes, it is obvious that you can use expression measurements as covariates when predicting subject phenotypes. We all do that on occasion. …

Comment: Extract Limma Adjusted Values for Plotting by ATpoint ★ 2.9k

Yes, with normalized counts on log2 scale.

Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Anna ▴ 20

A no I never referred to transcriptomic data when I was talking about "standard procedure" I was referring to the way we analyze longitudin…

Votes

A: Ranges from a fasta file

Answer: NA transcript values in my Txdb

Comment: Interpret plot from DiffBind

Answer: Use with_go along with other filters in getBM function

Awards • All

Scholar to Mike Smith ★ 6.0k