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Dear all,
Thank you a lot for providing great tool.
However, it's seem that the HiCDCPlus can be used in human and mouse. I would like to use it in plant genome.
Could you tell me how to do?
Thank you in advance.
Best wishes.
# include your problematic code here with any corresponding output
# please also include the results of running the following in an R session
sessionInfo( )
We only support species with annotations on BSgenome with the format BSgenome.<gen>.UCSC.<gen_ver>. Could you please check this website if your species of interest exists here https://bioconductor.org/packages/release/data/annotation/?
Hi Merve, the genome I am interested in ('BSgenome.Athaliana.TAIR.TAIR9') does not have 'UCSC' in the name. Any suggestions for how I can use this genome with HiCDCPlus? Would it be possible to add more flexible support for other genomes to HiCDCPlus in a future release?