Error with biomaRt
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goldenboy • 0
@a55d5206
Last seen 9 months ago
Montenegro

Dear all,

it turns out I cannot use biomaRt anymore. do you have any clue or know from what it might depend?

ensembl_db <- useEnsemblGenomes(biomart = "plants_mart")

Error in collect(): ! Failed to collect lazy table. Caused by error in db_collect(): ! Arguments in ... must be used. Problematic argument: ..1 = Inf Did you misspell an argument name? Run rlang::last_trace() to see where the error occurred.

biomaRt • 1.2k views
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Mike Smith ★ 6.6k
@mike-smith
Last seen 3 hours ago
EMBL Heidelberg

I think this is caused by using an older version of BiocFileCache and the latest dbplyr. It's not actually a problem with biomaRt, but rather packages it depends on.

There's more information and some solutions at biomaRt not working - lazy table error

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