Error with biomaRt
1
0
Entering edit mode
goldenboy • 0
@a55d5206
Last seen 9 months ago
Montenegro

Dear all,

it turns out I cannot use biomaRt anymore. do you have any clue or know from what it might depend?

ensembl_db <- useEnsemblGenomes(biomart = "plants_mart")

Error in collect(): ! Failed to collect lazy table. Caused by error in db_collect(): ! Arguments in ... must be used. Problematic argument: ..1 = Inf Did you misspell an argument name? Run rlang::last_trace() to see where the error occurred.

biomaRt • 1.2k views
ADD COMMENT
1
Entering edit mode
Mike Smith ★ 6.6k
@mike-smith
Last seen 5 hours ago
EMBL Heidelberg

I think this is caused by using an older version of BiocFileCache and the latest dbplyr. It's not actually a problem with biomaRt, but rather packages it depends on.

There's more information and some solutions at biomaRt not working - lazy table error

ADD COMMENT

Login before adding your answer.

Traffic: 947 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6