i am working on i
R version 3.3.2 (2016-10-31)
nickname Sincere Pumpkin Patch
initially i was able to access the airway package of bioconductor. but now wen i use the library(airway) it tells me that this package is not available. and when i again install it, it shows that package airway doesnt work with R version 3.3.2
install.packages("airway") Warning in install.packages : package ‘airway’ is not available (for R version 3.3.2)
looking forward for your help
thanking in anticipation
To install packages of Bioconductor use
biocLite
instead ofinstall.packages
to look for the right version in the right repository:Which error message appears when you call
library("airway")
?## try http:// if https:// URLs are not supported
> source("https://bioconductor.org/biocLite.R")
Bioconductor version 3.4 (BiocInstaller 1.24.0), ?biocLite for help
> biocLite("airway")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.4 (BiocInstaller 1.24.0), R 3.3.2 (2016-10-31).
Installing package(s) ‘airway’
installing the source package ‘airway’
trying URL 'https://bioconductor.org/packages/3.4/data/experiment/src/contrib/airway_0.108.0.tar.gz'
Content type 'application/x-gzip' length 11755934 bytes (11.2 MB)
downloaded 11.2 MB
* installing *source* package 'airway' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called 'zlibbioc'
Error : package 'GenomicRanges' could not be loaded
Error: loading failed
Execution halted
ERROR: loading failed
* removing 'C:/Users/Farah Qureshi/Documents/R/win-library/3.3/airway'
The downloaded source packages are in
‘C:\Users\Farah Qureshi\AppData\Local\Temp\RtmpCyjOjg\downloaded_packages’
installation path not writeable, unable to update packages: Matrix, mgcv, nlme, survival
Warning messages:
1: running command '"C:/PROGRA~1/R/R-33~1.2/bin/i386/R" CMD INSTALL -l "C:\Users\Farah Qureshi\Documents\R\win-library\3.3" C:\Users\FARAHQ~1\AppData\Local\Temp\RtmpCyjOjg/downloaded_packages/airway_0.108.0.tar.gz' had status 1
2: In install.packages(pkgs = doing, lib = lib, ...) :
installation of package ‘airway’ had non-zero exit status
Then you need to install GenomicRanges too and zlibbioc