Bioconductor New version

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DESeq2 deseqdatasetfrommatrix r new version

updated 4.8 years ago by Michael Love 40k • written 4.8 years ago by megannj • 0

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package bioconductor new version

6.3 years ago farahqureshi5 • 0

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biomaRT getBM new version

updated 6.5 years ago by James W. MacDonald 63k • written 6.5 years ago by u.seemab • 0

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deseq2 new version bioconductor software error reproducibility

6.6 years ago Daniel Elsner • 0

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diffbind new version

updated 8.0 years ago by Rory Stark ★ 4.8k • written 8.0 years ago by pkra • 0

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1.2k

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new version

8.3 years ago David Eby ▴ 30

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886

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upgrade new version backwards compatibility

updated 8.3 years ago by Steve Lianoglou 13k • written 8.3 years ago by jrdemasi • 0

7 results • Page 1 of 1

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Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Gordon Smyth 47k

limma already adjusts for the baseline expression level of each subject. Trying to include baseline expression explicitly in the linear mod…

Comment: Remove duplicate genera in DEseq output? by ATpoint ★ 2.9k

This seems to be very specific rather than a general and technical DESeq2 question. See the last point of https://support.bioconductor.org/…

Comment: Use with_go along with other filters in getBM function by RuBBiT0 ▴ 10

Hi @mike-smith , you are correct. I was trying to select the ones that have some GO annotations by using the `with_go` filter. I was confus…

Answer: Can VST-transformed community composition data be expressed as relative abundanc by Michael Love 40k

The point of the VST is to make the data systematically homoskedastic (that is, not systematic trend of variance over mean, but not e.g. fo…

Comment: How to update a package at Bioconductor by ma79 • 0

thanks, just informed the original maintainer to send an email.

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A: Using R package 'limma' on pre-normalized counts and the effect of non-equivalen

Using R package 'limma' on pre-normalized counts and the effect of non-equivalent reads/sample on limma linear model

A: What can I do if I only have TPM but not raw counts data?

What can I do if I only have TPM but not raw counts data?

Differential expression of FPKM from RNA-seq data using limma and voom()

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Teacher to deeenes ▴ 30