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Recent ...
Replies
Answer: Deseq2 - removing batch effect
by
Kevin Blighe
2.8k
Hi Vinisha, please always show the code that you used, in this case, the code that you used to input your raw counts, normalise these, gene…
Comment: High fold change reported for comparison of samples with zero values in all samp
by
Laura
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0
Hello,
Thank you so much for your response.
In fact, I removed those genes that have at least a cpm of 1 or greater for at least three samp…
Comment: lpsymphony compilation trouble
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Dario Strbenac
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This problem still exists in 2021 and deleting `pkgconfig` folder is still the workaround. May it be fixed once and for all in the package …
Comment: NA values of count matrix in class DESeqDataSet
by
Leonardo Collado Torres
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Nice, thanks for the answer!
Best,
Leo
Comment: Pipeline for an Anova-like analysis in edgeR
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Gordon Smyth
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There is no way to combine fold-change thresholding with an F-test. Fold-changes can only be associated with individual t-tests. So if you …
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