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Comment: [DESeq2] time series strain-specific differences over time
by
Michael Love
42k
Yes, this gives mut vs wt at minute 15 comparing to baseline.
Answer: Annotating DMRs
by
James W. MacDonald
67k
You could use `ChIPpeakAnno`, or `missMethyl`
Comment: [DESeq2] time series strain-specific differences over time
by
floriandeckert
▴ 30
Dear Michael, thank you very much! I think I do have a intuition of the problem. It is still correct to use the following to compare WT v…
Comment: ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
by
semra
• 0
``` >BiocManager::install(version = "3.19", lib = "~/R/x86_64-pc-linux-gnu-library/4.4") 'getOption("repos")' replaces Bioconductor standar…
Comment: [DESeq2] time series strain-specific differences over time
by
Michael Love
42k
I will say it is possible but a bit cumbersome to perform an LRT for 60 vs 0. You would have to re-run `DESeq()` or minimally `nbinomLRT` w…
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Comment: [DESeq2] time series strain-specific differences over time
Comment: [DESeq2] time series strain-specific differences over time
C: [DESeq2] time series strain-specific differences over time
Comment: [DESeq2] time series strain-specific differences over time
Comment: [DESeq2] time series strain-specific differences over time
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