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1 day ago Gero • 0
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Using DESeq2 to identify changing transcriptional activity in a metagenome
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40,577 results • Page 1 of 812
Recent ...
Replies
Comment: EnhancedVolcano plot with colCustom by Neeraja Vegesna • 0
Hi Kevin, It worked once I added `names(keyvals.colour1)[keyvals.colour1 == '#8F8F8F'] <- 'NA'`. ![volcanoplot][1] Thanks a lot for you…
Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza by mwong043 • 0
Thanks Rory. I tried the first method by defining a vector containing the normalisation factors for my samples and it worked. I am just wo…
Comment: EnhancedVolcano plot with colCustom by Kevin Blighe 2.8k
Hi, that's great that it works with a lower number of groups. Can you re-check the logic flow when you are using more groups? *EnhancedVolc…
Comment: EnhancedVolcano plot with colCustom by Neeraja Vegesna • 0
Hi Kevin, When I run the function in my previous post, the only warning I get is the following.. > Warning message: One or more p-values …
Comment: Which DESeq normalization method? by Michael Love 32k
Yes, we use VST for computing correlations.
Votes
Comment: Which DESeq normalization method?
Answer: Which DESeq normalization method?
tximeta Error in UseMethod("filter_")
Answer: tximeta Error in UseMethod("filter_")
A: [DESeq2] Best way to select the optimal fitType for dispersion estimates?
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