0
votes
1
answer
45
views
1
answer
2
votes
1
answer
41
views
1
answer
csaw::combineTests: Error: length(ids) == nrow(tab) is not TRUE
csaw written 6 days ago by endrebak8520 • updated 6 days ago by Aaron Lun16k
3
votes
1
answer
181
views
1
answer
2
votes
1
answer
545
views
1
answer
Exporting normalized counts over final DB windows from csaw
edger chip-seq csaw written 8 weeks ago by jms12230 • updated 8 weeks ago by Ryan C. Thompson5.9k
1
vote
1
answer
171
views
1
answer
csaw : effect of library size on filtering of uninteresting windows
csaw written 6 months ago by Vivek.b40 • updated 6 months ago by Aaron Lun16k
2
votes
1
answer
138
views
1
answer
Run windowCounts only on annotated regions?
csaw written 7 months ago by endrebak8520 • updated 7 months ago by Aaron Lun16k
3
votes
1
answer
302
views
1
answer
Hill in P-value distribution for heterogenous ChIP-seq samples
limma edger sva csaw qsmooth written 7 months ago by jma199130 • updated 7 months ago by Aaron Lun16k
3
votes
1
answer
286
views
1
answer
Differential Pol2 pausing analysis
chipseq edger csaw differential binding analysis written 7 months ago by dalerr0 • updated 7 months ago by Aaron Lun16k
3
votes
1
answer
232
views
1
answer
Use csaw to build matrix for heatmap?
chipseq edger csaw written 7 months ago by jmKeith0 • updated 7 months ago by Aaron Lun16k
3
votes
1
answer
251
views
1
answer
Interpretation of cross correlation plot to determine fragment length
chip-seq csaw histone written 8 months ago by siklenkak0 • updated 8 months ago by Aaron Lun16k
2
votes
1
answer
367
views
1
answer
Removing GC content bias and trended bias from ChIP-seq data
normalization edger cqn chip-seq csaw written 11 months ago by s14376430 • updated 11 months ago by Aaron Lun16k
2
votes
2
answers
292
views
2
answers
2
votes
1
answer
187
views
1
answer
csaw: removing PCR duplicates using dedup flag
csaw dedup written 11 months ago by asif.zubair0 • updated 11 months ago by James W. MacDonald44k
2
votes
1
answer
335
views
1
answer
csaw with negative controls
csaw written 14 months ago by chriad0
5
votes
1
answer
377
views
1
answer
1
vote
1
answer
624
views
1
answer
Normalization of chip-seq data in manually specified regions using CSAW
chip-seq csaw tmm tss written 16 months ago by saadmurtazakhan10 • updated 16 months ago by Aaron Lun16k
1
vote
1
answer
410
views
1
answer
csaw filterWindows function results in a warning: ("Zero library size detected.")
csaw written 16 months ago by chriad0 • updated 16 months ago by Aaron Lun16k
3
votes
1
answer
248
views
1
answer
window counts in csaw
counts csaw written 16 months ago by nobishvarghese0 • updated 16 months ago by Aaron Lun16k
2
votes
1
answer
258
views
1
answer
How does csaw handle multiply aligned reads?
chip-seq csaw written 16 months ago by endrebak8520 • updated 16 months ago by Aaron Lun16k
1
vote
1
answer
382
views
1
answer
1
vote
1
answer
212
views
1
answer
csaw: post clustering description of regions
csaw mergewindows written 16 months ago by asif.zubair0 • updated 16 months ago by Aaron Lun16k
2
votes
1
answer
218
views
1
answer
csaw: when not to dedup
csaw dedup written 16 months ago by asif.zubair0 • updated 16 months ago by Aaron Lun16k
3
votes
1
answer
243
views
1
answer
Detection of methylated regions from MeDIP data using csaw
csaw medip-chip written 17 months ago by nobishvarghese0 • updated 17 months ago by Aaron Lun16k
4
votes
1
answer
575
views
1
answer
2
votes
1
answer
266
views
1
answer
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