0
votes
1
answer
84
views
1
answer
2
votes
1
answer
95
views
1
answer
csaw: Estimate fragment length
csaw written 3 months ago by nicolas.descostes0
0
votes
0
answers
208
views
0
answers
csaw intallation issue: cannot find "lib" in Rhtslib installation
csaw diffhic rhtslib written 7 months ago by favorov0 • updated 7 months ago by Martin Morgan ♦♦ 21k
2
votes
1
answer
221
views
1
answer
complex design for chip-seq analysis
chipseq limma multiple factor design design matrix csaw written 7 months ago by Assa Yeroslaviz1.4k • updated 7 months ago by Aaron Lun19k
1
vote
1
answer
134
views
1
answer
the Normalise function in csaw
csaw written 8 months ago by tangj10
0
votes
1
answer
174
views
1
answer
2
votes
1
answer
153
views
1
answer
csaw::combineTests: Error: length(ids) == nrow(tab) is not TRUE
csaw written 9 months ago by endrebak8530 • updated 9 months ago by Aaron Lun19k
3
votes
1
answer
325
views
1
answer
2
votes
1
answer
688
views
1
answer
Exporting normalized counts over final DB windows from csaw
edger chip-seq csaw written 10 months ago by jms12230 • updated 10 months ago by Ryan C. Thompson6.8k
1
vote
1
answer
255
views
1
answer
csaw : effect of library size on filtering of uninteresting windows
csaw written 15 months ago by Vivek.b40 • updated 15 months ago by Aaron Lun19k
2
votes
1
answer
225
views
1
answer
Run windowCounts only on annotated regions?
csaw written 16 months ago by endrebak8530 • updated 16 months ago by Aaron Lun19k
3
votes
1
answer
507
views
1
answer
Hill in P-value distribution for heterogenous ChIP-seq samples
limma edger sva csaw qsmooth written 16 months ago by jma199130 • updated 16 months ago by Aaron Lun19k
3
votes
1
answer
493
views
1
answer
Differential Pol2 pausing analysis
chipseq edger csaw differential binding analysis written 16 months ago by dalerr0 • updated 16 months ago by Aaron Lun19k
3
votes
1
answer
394
views
1
answer
Use csaw to build matrix for heatmap?
chipseq edger csaw written 16 months ago by jmKeith0 • updated 16 months ago by Aaron Lun19k
3
votes
1
answer
380
views
1
answer
Interpretation of cross correlation plot to determine fragment length
chip-seq csaw histone written 17 months ago by siklenkak0 • updated 17 months ago by Aaron Lun19k
2
votes
1
answer
580
views
1
answer
Removing GC content bias and trended bias from ChIP-seq data
normalization edger cqn chip-seq csaw written 20 months ago by s14376430 • updated 20 months ago by Aaron Lun19k
2
votes
2
answers
471
views
2
answers
2
votes
1
answer
317
views
1
answer
csaw: removing PCR duplicates using dedup flag
csaw dedup written 20 months ago by asif.zubair0 • updated 20 months ago by James W. MacDonald46k
2
votes
1
answer
506
views
1
answer
csaw with negative controls
csaw written 23 months ago by chriad10
5
votes
1
answer
557
views
1
answer
1
vote
1
answer
942
views
1
answer
Normalization of chip-seq data in manually specified regions using CSAW
chip-seq csaw tmm tss written 2.1 years ago by saadmurtazakhan10 • updated 2.1 years ago by Aaron Lun19k
1
vote
1
answer
592
views
1
answer
csaw filterWindows function results in a warning: ("Zero library size detected.")
csaw written 2.1 years ago by chriad10 • updated 2.1 years ago by Aaron Lun19k
3
votes
1
answer
349
views
1
answer
window counts in csaw
counts csaw written 2.1 years ago by nobishvarghese0 • updated 2.1 years ago by Aaron Lun19k
2
votes
1
answer
390
views
1
answer
How does csaw handle multiply aligned reads?
chip-seq csaw written 2.1 years ago by endrebak8530 • updated 2.1 years ago by Aaron Lun19k
1
vote
1
answer
447
views
1
answer
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