Showing: csawreset
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csaw spike-in normalization
chip-seq csaw written 4 months ago by Nicolas Servant230 • updated 4 months ago by Aaron Lun23k
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176
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168
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CSAW ready to use R script
csaw written 6 months ago by polaxgr10 • updated 6 months ago by Aaron Lun23k
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174
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Best csaw normalization approach for ATAC-seq data
csaw written 6 months ago by Lucy0 • updated 6 months ago by Aaron Lun23k
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1
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147
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csaw: how to hack filtering windows by negative input controls?
csaw written 8 months ago by Jenny Drnevich1.9k • updated 8 months ago by Aaron Lun23k
2
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2
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225
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2
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Differential ChIP-seq analysis
diffbind csaw written 8 months ago by bioinfo0 • updated 8 months ago by Rory Stark2.7k
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290
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2
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223
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csaw: Estimate fragment length
csaw written 12 months ago by nicolas.descostes0
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342
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csaw intallation issue: cannot find "lib" in Rhtslib installation
csaw diffhic rhtslib written 17 months ago by favorov0 • updated 16 months ago by Martin Morgan ♦♦ 23k
2
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1
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370
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complex design for chip-seq analysis
chipseq limma multiple factor design design matrix csaw written 17 months ago by Assa Yeroslaviz1.4k • updated 17 months ago by Aaron Lun23k
1
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273
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the Normalise function in csaw
csaw written 17 months ago by tangj10
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317
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2
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286
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csaw::combineTests: Error: length(ids) == nrow(tab) is not TRUE
csaw written 18 months ago by endrebak8530 • updated 18 months ago by Aaron Lun23k
3
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464
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2
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1
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908
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Exporting normalized counts over final DB windows from csaw
edger chip-seq csaw written 19 months ago by jms12230 • updated 19 months ago by Ryan C. Thompson7.2k
1
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1
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442
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csaw : effect of library size on filtering of uninteresting windows
csaw written 24 months ago by Vivek.b90 • updated 24 months ago by Aaron Lun23k
2
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1
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308
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1
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Run windowCounts only on annotated regions?
csaw written 2.1 years ago by endrebak8530 • updated 2.1 years ago by Aaron Lun23k
3
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1
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783
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1
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Hill in P-value distribution for heterogenous ChIP-seq samples
limma edger sva csaw qsmooth written 2.1 years ago by jma199130 • updated 2.1 years ago by Aaron Lun23k
3
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1
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671
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1
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Differential Pol2 pausing analysis
chipseq edger csaw differential binding analysis written 2.1 years ago by dalerr0 • updated 2.1 years ago by Aaron Lun23k
3
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1
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528
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1
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Use csaw to build matrix for heatmap?
chipseq edger csaw written 2.1 years ago by jmKeith0 • updated 2.1 years ago by Aaron Lun23k
3
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1
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556
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1
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Interpretation of cross correlation plot to determine fragment length
chip-seq csaw histone written 2.2 years ago by siklenkak0 • updated 2.2 years ago by Aaron Lun23k
2
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1
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805
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1
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Removing GC content bias and trended bias from ChIP-seq data
normalization edger cqn chip-seq csaw written 2.4 years ago by s14376430 • updated 2.4 years ago by Aaron Lun23k
2
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2
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675
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