1
vote
1
answer
148
views
1
answer
csaw : effect of library size on filtering of uninteresting windows
csaw written 4 months ago by Vivek.b30 • updated 4 months ago by Aaron Lun15k
2
votes
1
answer
111
views
1
answer
Run windowCounts only on annotated regions?
csaw written 5 months ago by endrebak8520 • updated 5 months ago by Aaron Lun15k
3
votes
1
answer
257
views
1
answer
Hill in P-value distribution for heterogenous ChIP-seq samples
limma edger sva csaw qsmooth written 5 months ago by jma199120 • updated 5 months ago by Aaron Lun15k
3
votes
1
answer
237
views
1
answer
Differential Pol2 pausing analysis
chipseq edger csaw differential binding analysis written 5 months ago by dalerr0 • updated 5 months ago by Aaron Lun15k
3
votes
1
answer
178
views
1
answer
Use csaw to build matrix for heatmap?
chipseq edger csaw written 5 months ago by jmKeith0 • updated 5 months ago by Aaron Lun15k
3
votes
1
answer
218
views
1
answer
Interpretation of cross correlation plot to determine fragment length
chip-seq csaw histone written 6 months ago by siklenkak0 • updated 6 months ago by Aaron Lun15k
2
votes
1
answer
314
views
1
answer
Removing GC content bias and trended bias from ChIP-seq data
normalization edger cqn chip-seq csaw written 9 months ago by s14376430 • updated 9 months ago by Aaron Lun15k
2
votes
2
answers
261
views
2
answers
2
votes
1
answer
158
views
1
answer
csaw: removing PCR duplicates using dedup flag
csaw dedup written 9 months ago by asif.zubair0 • updated 9 months ago by James W. MacDonald43k
2
votes
1
answer
308
views
1
answer
csaw with negative controls
csaw written 12 months ago by chriad0
5
votes
1
answer
338
views
1
answer
1
vote
1
answer
539
views
1
answer
Normalization of chip-seq data in manually specified regions using CSAW
chip-seq csaw tmm tss written 14 months ago by saadmurtazakhan10 • updated 14 months ago by Aaron Lun15k
1
vote
1
answer
374
views
1
answer
csaw filterWindows function results in a warning: ("Zero library size detected.")
csaw written 14 months ago by chriad0 • updated 14 months ago by Aaron Lun15k
3
votes
1
answer
218
views
1
answer
window counts in csaw
counts csaw written 14 months ago by nobishvarghese0 • updated 14 months ago by Aaron Lun15k
2
votes
1
answer
227
views
1
answer
How does csaw handle multiply aligned reads?
chip-seq csaw written 14 months ago by endrebak8520 • updated 14 months ago by Aaron Lun15k
1
vote
1
answer
362
views
1
answer
1
vote
1
answer
189
views
1
answer
csaw: post clustering description of regions
csaw mergewindows written 14 months ago by asif.zubair0 • updated 14 months ago by Aaron Lun15k
2
votes
1
answer
202
views
1
answer
csaw: when not to dedup
csaw dedup written 14 months ago by asif.zubair0 • updated 14 months ago by Aaron Lun15k
3
votes
1
answer
216
views
1
answer
Detection of methylated regions from MeDIP data using csaw
csaw medip-chip written 14 months ago by nobishvarghese0 • updated 14 months ago by Aaron Lun15k
4
votes
1
answer
518
views
1
answer
2
votes
1
answer
241
views
1
answer
2
votes
1
answer
291
views
1
answer
Unexpected reversal in normalization factors from csaw
normalization csaw written 15 months ago by Ryan C. Thompson5.8k • updated 15 months ago by Aaron Lun15k
1
vote
1
answer
385
views
1
answer
2
votes
1
answer
355
views
1
answer
2
votes
4
answers
469
views
4
answers
CSAW: GAIN and LOSS of enrichment
csaw written 2.2 years ago by sergio.espeso-gil0 • updated 16 months ago by JoannaF0
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