0
votes
1
answer
33
views
1
answer
csaw: how to hack filtering windows by negative input controls?
csaw written 29 days ago by Jenny Drnevich1.9k • updated 28 days ago by Aaron Lun20k
2
votes
2
answers
70
views
2
answers
Differential ChIP-seq analysis
diffbind csaw written 5 weeks ago by bioinfo0 • updated 5 weeks ago by Rory Stark2.5k
0
votes
1
answer
128
views
1
answer
2
votes
1
answer
114
views
1
answer
csaw: Estimate fragment length
csaw written 5 months ago by nicolas.descostes0
0
votes
0
answers
233
views
0
answers
csaw intallation issue: cannot find "lib" in Rhtslib installation
csaw diffhic rhtslib written 9 months ago by favorov0 • updated 9 months ago by Martin Morgan ♦♦ 22k
2
votes
1
answer
247
views
1
answer
complex design for chip-seq analysis
chipseq limma multiple factor design design matrix csaw written 9 months ago by Assa Yeroslaviz1.4k • updated 9 months ago by Aaron Lun20k
1
vote
1
answer
156
views
1
answer
the Normalise function in csaw
csaw written 10 months ago by tangj10
0
votes
1
answer
198
views
1
answer
2
votes
1
answer
171
views
1
answer
csaw::combineTests: Error: length(ids) == nrow(tab) is not TRUE
csaw written 11 months ago by endrebak8530 • updated 11 months ago by Aaron Lun20k
3
votes
1
answer
354
views
1
answer
2
votes
1
answer
730
views
1
answer
Exporting normalized counts over final DB windows from csaw
edger chip-seq csaw written 12 months ago by jms12230 • updated 12 months ago by Ryan C. Thompson6.8k
1
vote
1
answer
291
views
1
answer
csaw : effect of library size on filtering of uninteresting windows
csaw written 17 months ago by Vivek.b50 • updated 17 months ago by Aaron Lun20k
2
votes
1
answer
240
views
1
answer
Run windowCounts only on annotated regions?
csaw written 18 months ago by endrebak8530 • updated 18 months ago by Aaron Lun20k
3
votes
1
answer
563
views
1
answer
Hill in P-value distribution for heterogenous ChIP-seq samples
limma edger sva csaw qsmooth written 18 months ago by jma199130 • updated 18 months ago by Aaron Lun20k
3
votes
1
answer
528
views
1
answer
Differential Pol2 pausing analysis
chipseq edger csaw differential binding analysis written 18 months ago by dalerr0 • updated 18 months ago by Aaron Lun20k
3
votes
1
answer
418
views
1
answer
Use csaw to build matrix for heatmap?
chipseq edger csaw written 18 months ago by jmKeith0 • updated 18 months ago by Aaron Lun20k
3
votes
1
answer
414
views
1
answer
Interpretation of cross correlation plot to determine fragment length
chip-seq csaw histone written 19 months ago by siklenkak0 • updated 19 months ago by Aaron Lun20k
2
votes
1
answer
627
views
1
answer
Removing GC content bias and trended bias from ChIP-seq data
normalization edger cqn chip-seq csaw written 22 months ago by s14376430 • updated 22 months ago by Aaron Lun20k
2
votes
2
answers
523
views
2
answers
2
votes
1
answer
341
views
1
answer
csaw: removing PCR duplicates using dedup flag
csaw dedup written 22 months ago by asif.zubair0 • updated 22 months ago by James W. MacDonald47k
2
votes
1
answer
542
views
1
answer
csaw with negative controls
csaw written 2.1 years ago by chriad10
5
votes
1
answer
592
views
1
answer
1
vote
1
answer
1.0k
views
1
answer
Normalization of chip-seq data in manually specified regions using CSAW
chip-seq csaw tmm tss written 2.2 years ago by saadmurtazakhan10 • updated 2.2 years ago by Aaron Lun20k
1
vote
1
answer
629
views
1
answer
csaw filterWindows function results in a warning: ("Zero library size detected.")
csaw written 2.2 years ago by chriad10 • updated 2.2 years ago by Aaron Lun20k
3
votes
1
answer
362
views
1
answer
window counts in csaw
counts csaw written 2.2 years ago by nobishvarghese0 • updated 2.2 years ago by Aaron Lun20k
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