0
votes
1
answer
81
views
1
answer
1
vote
1
answer
79
views
1
answer
CSAW ready to use R script
csaw written 6 weeks ago by polaxgr10 • updated 6 weeks ago by Aaron Lun21k
0
votes
1
answer
86
views
1
answer
Best csaw normalization approach for ATAC-seq data
csaw written 8 weeks ago by Lucy0 • updated 6 weeks ago by Aaron Lun21k
0
votes
1
answer
68
views
1
answer
csaw: how to hack filtering windows by negative input controls?
csaw written 3 months ago by Jenny Drnevich1.9k • updated 3 months ago by Aaron Lun21k
2
votes
2
answers
127
views
2
answers
Differential ChIP-seq analysis
diffbind csaw written 3 months ago by bioinfo0 • updated 3 months ago by Rory Stark2.6k
0
votes
1
answer
168
views
1
answer
2
votes
1
answer
150
views
1
answer
csaw: Estimate fragment length
csaw written 7 months ago by nicolas.descostes0
0
votes
0
answers
268
views
0
answers
csaw intallation issue: cannot find "lib" in Rhtslib installation
csaw diffhic rhtslib written 12 months ago by favorov0 • updated 11 months ago by Martin Morgan ♦♦ 22k
2
votes
1
answer
288
views
1
answer
complex design for chip-seq analysis
chipseq limma multiple factor design design matrix csaw written 12 months ago by Assa Yeroslaviz1.4k • updated 12 months ago by Aaron Lun21k
1
vote
1
answer
186
views
1
answer
the Normalise function in csaw
csaw written 12 months ago by tangj10
0
votes
1
answer
232
views
1
answer
2
votes
1
answer
210
views
1
answer
csaw::combineTests: Error: length(ids) == nrow(tab) is not TRUE
csaw written 13 months ago by endrebak8530 • updated 13 months ago by Aaron Lun21k
3
votes
1
answer
386
views
1
answer
2
votes
1
answer
785
views
1
answer
Exporting normalized counts over final DB windows from csaw
edger chip-seq csaw written 14 months ago by jms12230 • updated 14 months ago by Ryan C. Thompson6.9k
1
vote
1
answer
359
views
1
answer
csaw : effect of library size on filtering of uninteresting windows
csaw written 19 months ago by Vivek.b70 • updated 19 months ago by Aaron Lun21k
2
votes
1
answer
262
views
1
answer
Run windowCounts only on annotated regions?
csaw written 20 months ago by endrebak8530 • updated 20 months ago by Aaron Lun21k
3
votes
1
answer
612
views
1
answer
Hill in P-value distribution for heterogenous ChIP-seq samples
limma edger sva csaw qsmooth written 20 months ago by jma199130 • updated 20 months ago by Aaron Lun21k
3
votes
1
answer
576
views
1
answer
Differential Pol2 pausing analysis
chipseq edger csaw differential binding analysis written 20 months ago by dalerr0 • updated 20 months ago by Aaron Lun21k
3
votes
1
answer
455
views
1
answer
Use csaw to build matrix for heatmap?
chipseq edger csaw written 20 months ago by jmKeith0 • updated 20 months ago by Aaron Lun21k
3
votes
1
answer
453
views
1
answer
Interpretation of cross correlation plot to determine fragment length
chip-seq csaw histone written 21 months ago by siklenkak0 • updated 21 months ago by Aaron Lun21k
2
votes
1
answer
692
views
1
answer
Removing GC content bias and trended bias from ChIP-seq data
normalization edger cqn chip-seq csaw written 2.0 years ago by s14376430 • updated 2.0 years ago by Aaron Lun21k
2
votes
2
answers
567
views
2
answers
2
votes
1
answer
374
views
1
answer
csaw: removing PCR duplicates using dedup flag
csaw dedup written 2.0 years ago by asif.zubair0 • updated 2.0 years ago by James W. MacDonald48k
2
votes
1
answer
609
views
1
answer
csaw with negative controls
csaw written 2.3 years ago by chriad10
5
votes
1
answer
626
views
1
answer
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