1
vote
1
answer
114
views
1
answer
csaw : effect of library size on filtering of uninteresting windows
csaw written 9 weeks ago by Vivek.b30 • updated 9 weeks ago by Aaron Lun14k
2
votes
1
answer
85
views
1
answer
Run windowCounts only on annotated regions?
csaw written 3 months ago by endrebak8510 • updated 3 months ago by Aaron Lun14k
3
votes
1
answer
200
views
1
answer
Hill in P-value distribution for heterogenous ChIP-seq samples
limma edger sva csaw qsmooth written 3 months ago by jma199120 • updated 3 months ago by Aaron Lun14k
3
votes
1
answer
202
views
1
answer
Differential Pol2 pausing analysis
chipseq edger csaw differential binding analysis written 3 months ago by dalerr0 • updated 3 months ago by Aaron Lun14k
3
votes
1
answer
146
views
1
answer
Use csaw to build matrix for heatmap?
chipseq edger csaw written 3 months ago by jmKeith0 • updated 3 months ago by Aaron Lun14k
3
votes
1
answer
173
views
1
answer
Interpretation of cross correlation plot to determine fragment length
chip-seq csaw histone written 4 months ago by siklenkak0 • updated 4 months ago by Aaron Lun14k
2
votes
1
answer
258
views
1
answer
Removing GC content bias and trended bias from ChIP-seq data
normalization edger cqn chip-seq csaw written 7 months ago by s14376430 • updated 7 months ago by Aaron Lun14k
2
votes
2
answers
216
views
2
answers
2
votes
1
answer
132
views
1
answer
csaw: removing PCR duplicates using dedup flag
csaw dedup written 7 months ago by asif.zubair0 • updated 7 months ago by James W. MacDonald43k
2
votes
1
answer
272
views
1
answer
csaw with negative controls
csaw written 10 months ago by chriad0
5
votes
1
answer
306
views
1
answer
1
vote
1
answer
482
views
1
answer
Normalization of chip-seq data in manually specified regions using CSAW
chip-seq csaw tmm tss written 12 months ago by saadmurtazakhan10 • updated 12 months ago by Aaron Lun14k
1
vote
1
answer
324
views
1
answer
csaw filterWindows function results in a warning: ("Zero library size detected.")
csaw written 12 months ago by chriad0 • updated 12 months ago by Aaron Lun14k
3
votes
1
answer
184
views
1
answer
window counts in csaw
counts csaw written 12 months ago by nobishvarghese0 • updated 12 months ago by Aaron Lun14k
2
votes
1
answer
189
views
1
answer
How does csaw handle multiply aligned reads?
chip-seq csaw written 12 months ago by endrebak8510 • updated 12 months ago by Aaron Lun14k
1
vote
1
answer
325
views
1
answer
1
vote
1
answer
166
views
1
answer
csaw: post clustering description of regions
csaw mergewindows written 12 months ago by asif.zubair0 • updated 12 months ago by Aaron Lun14k
2
votes
1
answer
166
views
1
answer
csaw: when not to dedup
csaw dedup written 12 months ago by asif.zubair0 • updated 12 months ago by Aaron Lun14k
3
votes
1
answer
185
views
1
answer
Detection of methylated regions from MeDIP data using csaw
csaw medip-chip written 12 months ago by nobishvarghese0 • updated 12 months ago by Aaron Lun14k
4
votes
1
answer
465
views
1
answer
2
votes
1
answer
214
views
1
answer
2
votes
1
answer
258
views
1
answer
Unexpected reversal in normalization factors from csaw
normalization csaw written 13 months ago by Ryan C. Thompson5.7k • updated 13 months ago by Aaron Lun14k
1
vote
1
answer
331
views
1
answer
2
votes
1
answer
320
views
1
answer
2
votes
4
answers
434
views
4
answers
CSAW: GAIN and LOSS of enrichment
csaw written 2.1 years ago by sergio.espeso-gil0 • updated 14 months ago by JoannaF0
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