Showing: csawreset
2
votes
1
answer
96
views
1
answer
1
vote
1
answer
120
views
1
answer
Error while running normOffsets in diffhic
csaw diffhic written 4 months ago by shopnil990 • updated 4 months ago by Aaron Lun25k
4
votes
1
answer
140
views
1
answer
csaw: Error in path.expand(bam.file) : invalid 'path' argument
software error csaw written 5 months ago by vanbelj0 • updated 5 months ago by Martin Morgan ♦♦ 24k
3
votes
1
answer
558
views
1
answer
DEseq2 for differential binding analysis ChIP seq
chipseq diffbind deseq2 csaw greylistchip written 11 months ago by Yonatan Amzaleg0 • updated 11 months ago by Michael Love26k
0
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2
answers
251
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2
answers
0
votes
1
answer
297
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1
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csaw spike-in normalization
chip-seq csaw written 13 months ago by Nicolas Servant260 • updated 13 months ago by Aaron Lun25k
0
votes
1
answer
259
views
1
answer
1
vote
1
answer
319
views
1
answer
CSAW ready to use R script
csaw written 15 months ago by polaxgr10 • updated 15 months ago by Aaron Lun25k
0
votes
1
answer
318
views
1
answer
Best csaw normalization approach for ATAC-seq data
csaw written 15 months ago by Lucy0 • updated 15 months ago by Aaron Lun25k
0
votes
1
answer
259
views
1
answer
csaw: how to hack filtering windows by negative input controls?
csaw written 17 months ago by Jenny Drnevich1.9k • updated 16 months ago by Aaron Lun25k
2
votes
2
answers
325
views
2
answers
Differential ChIP-seq analysis
diffbind csaw written 17 months ago by bioinfo0 • updated 17 months ago by Rory Stark3.0k
0
votes
1
answer
440
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1
answer
2
votes
1
answer
343
views
1
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csaw: Estimate fragment length
csaw written 21 months ago by nicolas.descostes20
0
votes
0
answers
454
views
0
answers
csaw intallation issue: cannot find "lib" in Rhtslib installation
csaw diffhic rhtslib written 2.1 years ago by favorov0 • updated 2.1 years ago by Martin Morgan ♦♦ 24k
2
votes
1
answer
493
views
1
answer
complex design for chip-seq analysis
chipseq limma multiple factor design design matrix csaw written 2.1 years ago by Assa Yeroslaviz1.4k • updated 2.1 years ago by Aaron Lun25k
1
vote
1
answer
378
views
1
answer
the Normalise function in csaw
csaw written 2.2 years ago by tangj10
0
votes
1
answer
457
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1
answer
2
votes
1
answer
398
views
1
answer
csaw::combineTests: Error: length(ids) == nrow(tab) is not TRUE
csaw written 2.2 years ago by endrebak8530 • updated 2.2 years ago by Aaron Lun25k
3
votes
1
answer
577
views
1
answer
2
votes
1
answer
1.1k
views
1
answer
Exporting normalized counts over final DB windows from csaw
edger chip-seq csaw written 2.4 years ago by jms12230 • updated 2.4 years ago by Ryan C. Thompson7.4k
1
vote
1
answer
548
views
1
answer
csaw : effect of library size on filtering of uninteresting windows
csaw written 2.7 years ago by Vivek.b100 • updated 2.7 years ago by Aaron Lun25k
2
votes
1
answer
399
views
1
answer
Run windowCounts only on annotated regions?
csaw written 2.8 years ago by endrebak8530 • updated 2.8 years ago by Aaron Lun25k
3
votes
1
answer
891
views
1
answer
Hill in P-value distribution for heterogenous ChIP-seq samples
limma edger sva csaw qsmooth written 2.9 years ago by jma199130 • updated 2.9 years ago by Aaron Lun25k
3
votes
1
answer
793
views
1
answer
Differential Pol2 pausing analysis
chipseq edger csaw differential binding analysis written 2.9 years ago by dalerr0 • updated 2.9 years ago by Aaron Lun25k
3
votes
1
answer
632
views
1
answer
Use csaw to build matrix for heatmap?
chipseq edger csaw written 2.9 years ago by jmKeith0 • updated 2.9 years ago by Aaron Lun25k
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