Showing: csawreset
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csaw spike-in normalization
chip-seq csaw written 12 weeks ago by Nicolas Servant230 • updated 12 weeks ago by Aaron Lun22k
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149
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133
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CSAW ready to use R script
csaw written 4 months ago by polaxgr10 • updated 4 months ago by Aaron Lun22k
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144
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Best csaw normalization approach for ATAC-seq data
csaw written 5 months ago by Lucy0 • updated 4 months ago by Aaron Lun22k
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115
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csaw: how to hack filtering windows by negative input controls?
csaw written 6 months ago by Jenny Drnevich1.9k • updated 6 months ago by Aaron Lun22k
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2
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199
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2
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Differential ChIP-seq analysis
diffbind csaw written 6 months ago by bioinfo0 • updated 6 months ago by Rory Stark2.7k
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250
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2
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194
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csaw: Estimate fragment length
csaw written 10 months ago by nicolas.descostes0
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317
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csaw intallation issue: cannot find "lib" in Rhtslib installation
csaw diffhic rhtslib written 15 months ago by favorov0 • updated 15 months ago by Martin Morgan ♦♦ 22k
2
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1
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346
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complex design for chip-seq analysis
chipseq limma multiple factor design design matrix csaw written 15 months ago by Assa Yeroslaviz1.4k • updated 15 months ago by Aaron Lun22k
1
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241
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the Normalise function in csaw
csaw written 15 months ago by tangj10
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284
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2
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259
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csaw::combineTests: Error: length(ids) == nrow(tab) is not TRUE
csaw written 16 months ago by endrebak8530 • updated 16 months ago by Aaron Lun22k
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437
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2
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871
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Exporting normalized counts over final DB windows from csaw
edger chip-seq csaw written 18 months ago by jms12230 • updated 18 months ago by Ryan C. Thompson7.1k
1
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419
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csaw : effect of library size on filtering of uninteresting windows
csaw written 22 months ago by Vivek.b90 • updated 22 months ago by Aaron Lun22k
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1
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292
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Run windowCounts only on annotated regions?
csaw written 23 months ago by endrebak8530 • updated 23 months ago by Aaron Lun22k
3
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1
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754
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1
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Hill in P-value distribution for heterogenous ChIP-seq samples
limma edger sva csaw qsmooth written 24 months ago by jma199130 • updated 23 months ago by Aaron Lun22k
3
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1
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636
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Differential Pol2 pausing analysis
chipseq edger csaw differential binding analysis written 24 months ago by dalerr0 • updated 23 months ago by Aaron Lun22k
3
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507
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1
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Use csaw to build matrix for heatmap?
chipseq edger csaw written 24 months ago by jmKeith0 • updated 24 months ago by Aaron Lun22k
3
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1
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515
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Interpretation of cross correlation plot to determine fragment length
chip-seq csaw histone written 2.0 years ago by siklenkak0 • updated 2.0 years ago by Aaron Lun22k
2
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764
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Removing GC content bias and trended bias from ChIP-seq data
normalization edger cqn chip-seq csaw written 2.3 years ago by s14376430 • updated 2.3 years ago by Aaron Lun22k
2
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2
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646
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