2
votes
1
answer
43
views
1
answer
Run windowCounts only on annotated regions?
csaw written 5 days ago by endrebak8510 • updated 5 days ago by Aaron Lun13k
2
votes
1
answer
109
views
1
answer
Hill in P-value distribution for heterogenous ChIP-seq samples
sva qsmooth csaw limma edger written 23 days ago by jma199110 • updated 23 days ago by Aaron Lun13k
3
votes
1
answer
110
views
1
answer
Differential Pol2 pausing analysis
chipseq differential binding analysis csaw edger written 23 days ago by dalerr0 • updated 23 days ago by Aaron Lun13k
3
votes
1
answer
91
views
1
answer
Use csaw to build matrix for heatmap?
chipseq csaw edger written 25 days ago by jmKeith0 • updated 24 days ago by Aaron Lun13k
3
votes
1
answer
102
views
1
answer
Interpretation of cross correlation plot to determine fragment length
chip-seq histone csaw written 6 weeks ago by siklenkak0 • updated 6 weeks ago by Aaron Lun13k
2
votes
1
answer
162
views
1
answer
Removing GC content bias and trended bias from ChIP-seq data
normalization cqn chip-seq csaw edger written 4 months ago by s14376430 • updated 4 months ago by Aaron Lun13k
2
votes
2
answers
157
views
2
answers
2
votes
1
answer
83
views
1
answer
csaw: removing PCR duplicates using dedup flag
dedup csaw written 4 months ago by asif.zubair0 • updated 4 months ago by James W. MacDonald42k
2
votes
1
answer
213
views
1
answer
csaw with negative controls
csaw written 7 months ago by chriad0
5
votes
1
answer
243
views
1
answer
1
vote
1
answer
361
views
1
answer
1
vote
1
answer
258
views
1
answer
csaw filterWindows function results in a warning: ("Zero library size detected.")
csaw written 9 months ago by chriad0 • updated 9 months ago by Aaron Lun13k
3
votes
1
answer
139
views
1
answer
window counts in csaw
csaw counts written 9 months ago by nobishvarghese0 • updated 9 months ago by Aaron Lun13k
2
votes
1
answer
148
views
1
answer
How does csaw handle multiply aligned reads?
chip-seq csaw written 9 months ago by endrebak8510 • updated 9 months ago by Aaron Lun13k
1
vote
1
answer
273
views
1
answer
1
vote
1
answer
129
views
1
answer
csaw: post clustering description of regions
mergewindows csaw written 9 months ago by asif.zubair0 • updated 9 months ago by Aaron Lun13k
2
votes
1
answer
135
views
1
answer
csaw: when not to dedup
dedup csaw written 9 months ago by asif.zubair0 • updated 9 months ago by Aaron Lun13k
3
votes
1
answer
149
views
1
answer
Detection of methylated regions from MeDIP data using csaw
medip-chip csaw written 9 months ago by nobishvarghese0 • updated 9 months ago by Aaron Lun13k
4
votes
1
answer
361
views
1
answer
2
votes
1
answer
170
views
1
answer
2
votes
1
answer
191
views
1
answer
Unexpected reversal in normalization factors from csaw
csaw normalization written 10 months ago by Ryan C. Thompson5.4k • updated 10 months ago by Aaron Lun13k
1
vote
1
answer
271
views
1
answer
2
votes
1
answer
264
views
1
answer
2
votes
4
answers
388
views
4
answers
CSAW: GAIN and LOSS of enrichment
csaw written 22 months ago by sergio.espeso-gil0 • updated 11 months ago by JoannaF0
5
votes
1
answer
272
views
1
answer
Saving the CSAW results to file
csaw edger written 14 months ago by gthm0 • updated 14 months ago by Aaron Lun13k
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