3
votes
1
answer
72
views
1
answer
2
votes
1
answer
133
views
1
answer
Removing GC content bias and trended bias from ChIP-seq data
normalization cqn chip-seq csaw edger written 3 months ago by s14376430 • updated 3 months ago by Aaron Lun13k
2
votes
2
answers
127
views
2
answers
2
votes
1
answer
76
views
1
answer
csaw: removing PCR duplicates using dedup flag
dedup csaw written 3 months ago by asif.zubair0 • updated 3 months ago by James W. MacDonald41k
2
votes
1
answer
194
views
1
answer
csaw with negative controls
csaw written 6 months ago by chriad0
5
votes
1
answer
228
views
1
answer
1
vote
1
answer
327
views
1
answer
1
vote
1
answer
240
views
1
answer
csaw filterWindows function results in a warning: ("Zero library size detected.")
csaw written 8 months ago by chriad0 • updated 8 months ago by Aaron Lun13k
3
votes
1
answer
119
views
1
answer
window counts in csaw
csaw counts written 8 months ago by nobishvarghese0 • updated 8 months ago by Aaron Lun13k
2
votes
1
answer
130
views
1
answer
How does csaw handle multiply aligned reads?
chip-seq csaw written 8 months ago by endrebak8510 • updated 8 months ago by Aaron Lun13k
1
vote
1
answer
257
views
1
answer
1
vote
1
answer
118
views
1
answer
csaw: post clustering description of regions
mergewindows csaw written 8 months ago by asif.zubair0 • updated 8 months ago by Aaron Lun13k
2
votes
1
answer
124
views
1
answer
csaw: when not to dedup
dedup csaw written 8 months ago by asif.zubair0 • updated 8 months ago by Aaron Lun13k
3
votes
1
answer
134
views
1
answer
Detection of methylated regions from MeDIP data using csaw
medip-chip csaw written 8 months ago by nobishvarghese0 • updated 8 months ago by Aaron Lun13k
4
votes
1
answer
311
views
1
answer
2
votes
1
answer
152
views
1
answer
2
votes
1
answer
175
views
1
answer
Unexpected reversal in normalization factors from csaw
csaw normalization written 9 months ago by Ryan C. Thompson5.2k • updated 9 months ago by Aaron Lun13k
1
vote
1
answer
236
views
1
answer
2
votes
1
answer
245
views
1
answer
2
votes
4
answers
365
views
4
answers
CSAW: GAIN and LOSS of enrichment
csaw written 21 months ago by sergio.espeso-gil0 • updated 10 months ago by JoannaF0
5
votes
1
answer
257
views
1
answer
Saving the CSAW results to file
csaw edger written 13 months ago by gthm0 • updated 13 months ago by Aaron Lun13k
0
votes
1
answer
360
views
1
answer
CSAW: Error: could not find function "normOffsets"
chipseq csaw edger written 13 months ago by gthm0 • updated 13 months ago by Aaron Lun13k
1
vote
1
answer
264
views
1
answer
FDR calculation by combineTests in csaw
csaw written 14 months ago by renanec0 • updated 14 months ago by Aaron Lun13k
2
votes
1
answer
148
views
1
answer
csaw not up to date
csaw written 14 months ago by jerome.eeckhoute0 • updated 14 months ago by Aaron Lun13k
4
votes
2
answers
332
views
2
answers
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