Showing: csawreset
2
votes
1
answer
67
views
1
answer
1
vote
1
answer
94
views
1
answer
Error while running normOffsets in diffhic
csaw diffhic written 10 weeks ago by shopnil990 • updated 10 weeks ago by Aaron Lun25k
4
votes
1
answer
113
views
1
answer
csaw: Error in path.expand(bam.file) : invalid 'path' argument
software error csaw written 3 months ago by vanbelj0 • updated 3 months ago by Martin Morgan ♦♦ 23k
3
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1
answer
467
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1
answer
0
votes
2
answers
234
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2
answers
0
votes
1
answer
263
views
1
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csaw spike-in normalization
chip-seq csaw written 11 months ago by Nicolas Servant260 • updated 11 months ago by Aaron Lun25k
0
votes
1
answer
245
views
1
answer
1
vote
1
answer
286
views
1
answer
CSAW ready to use R script
csaw written 13 months ago by polaxgr10 • updated 13 months ago by Aaron Lun25k
0
votes
1
answer
280
views
1
answer
Best csaw normalization approach for ATAC-seq data
csaw written 13 months ago by Lucy0 • updated 13 months ago by Aaron Lun25k
0
votes
1
answer
242
views
1
answer
csaw: how to hack filtering windows by negative input controls?
csaw written 15 months ago by Jenny Drnevich1.9k • updated 15 months ago by Aaron Lun25k
2
votes
2
answers
308
views
2
answers
Differential ChIP-seq analysis
diffbind csaw written 15 months ago by bioinfo0 • updated 15 months ago by Rory Stark2.8k
0
votes
1
answer
409
views
1
answer
2
votes
1
answer
322
views
1
answer
csaw: Estimate fragment length
csaw written 19 months ago by nicolas.descostes20
0
votes
0
answers
436
views
0
answers
csaw intallation issue: cannot find "lib" in Rhtslib installation
csaw diffhic rhtslib written 23 months ago by favorov0 • updated 23 months ago by Martin Morgan ♦♦ 23k
2
votes
1
answer
471
views
1
answer
complex design for chip-seq analysis
chipseq limma multiple factor design design matrix csaw written 24 months ago by Assa Yeroslaviz1.4k • updated 24 months ago by Aaron Lun25k
1
vote
1
answer
358
views
1
answer
the Normalise function in csaw
csaw written 2.0 years ago by tangj10
0
votes
1
answer
415
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1
answer
2
votes
1
answer
381
views
1
answer
csaw::combineTests: Error: length(ids) == nrow(tab) is not TRUE
csaw written 2.1 years ago by endrebak8530 • updated 2.1 years ago by Aaron Lun25k
3
votes
1
answer
556
views
1
answer
2
votes
1
answer
1.0k
views
1
answer
Exporting normalized counts over final DB windows from csaw
edger chip-seq csaw written 2.2 years ago by jms12230 • updated 2.2 years ago by Ryan C. Thompson7.4k
1
vote
1
answer
526
views
1
answer
csaw : effect of library size on filtering of uninteresting windows
csaw written 2.6 years ago by Vivek.b100 • updated 2.6 years ago by Aaron Lun25k
2
votes
1
answer
388
views
1
answer
Run windowCounts only on annotated regions?
csaw written 2.6 years ago by endrebak8530 • updated 2.6 years ago by Aaron Lun25k
3
votes
1
answer
870
views
1
answer
Hill in P-value distribution for heterogenous ChIP-seq samples
limma edger sva csaw qsmooth written 2.7 years ago by jma199130 • updated 2.7 years ago by Aaron Lun25k
3
votes
1
answer
773
views
1
answer
Differential Pol2 pausing analysis
chipseq edger csaw differential binding analysis written 2.7 years ago by dalerr0 • updated 2.7 years ago by Aaron Lun25k
3
votes
1
answer
615
views
1
answer
Use csaw to build matrix for heatmap?
chipseq edger csaw written 2.7 years ago by jmKeith0 • updated 2.7 years ago by Aaron Lun25k
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