3
votes
1
answer
58
views
1
answer
DESeq2: interaction term as in limma
limma deseq deseq2 interaction term written 1 day ago by sbcn40 • updated 1 day ago by Simon Anders3.2k
5
votes
2
answers
88
views
2
answers
3
votes
1
answer
179
views
1
answer
standard error value (lfcSE) returned by DeSeq2
deseq deseq2 standard error lfc lfcse written 7 weeks ago by tootiki0 • updated 19 days ago by rraadd_80
1
vote
1
answer
80
views
1
answer
diffHiC with no biological replicates?
deseq glm diffhic estimate dispersion value no replicates written 29 days ago by hwick10 • updated 29 days ago by Aaron Lun14k
3
votes
1
answer
116
views
1
answer
3
votes
1
answer
125
views
1
answer
What problem does the MA plot diagnose? And how do you solve it?
rnaseq deseq deseq2 written 8 weeks ago by ysdel0 • updated 8 weeks ago by Ryan C. Thompson5.6k
1
vote
1
answer
131
views
1
answer
0
votes
1
answer
97
views
1
answer
DESeq pvalue & padj
deseq written 9 weeks ago by manoharankumar010 • updated 9 weeks ago by Gavin Kelly170
0
votes
0
answers
90
views
0
answers
0
votes
1
answer
115
views
1
answer
How to remove genes with 0 counts in tximport?
deseq deseq2 tximport tximportdata written 11 weeks ago by Peter Alto0 • updated 11 weeks ago by Michael Love11k
0
votes
0
answers
115
views
0
answers
1
vote
2
answers
154
views
2
answers
0
votes
2
answers
1.7k
views
2
answers
DESeq2 multiple factors nested design
deseq deseq2 written 3.1 years ago by Guest User12k • updated 3 months ago by blawney0
0
votes
1
answer
122
views
1
answer
how to change color of points log2foldchange>1
deseq written 4 months ago by 130277160620 • updated 4 months ago by Wolfgang Huber13k
0
votes
1
answer
258
views
1
answer
Estimating group-specific dispersion in DESeq2
deseq deseq2 estimatedispersions written 5 months ago by bkellman0 • updated 5 months ago by Michael Love11k
2
votes
1
answer
210
views
1
answer
DESeq2 multifactor test using batch as one of the factor
deseq deseq2 written 7 months ago by vd4mmind0 • updated 7 months ago by Michael Love11k
0
votes
2
answers
945
views
2
answers
2
votes
5
answers
229
views
5
answers
3
votes
2
answers
323
views
2
answers
Labeling points with hgnc symbols on the MA plot in DESeq2
deseq ma written 9 months ago by spark270 • updated 9 months ago by phil.chapman120
0
votes
1
answer
187
views
1
answer
DESeq outlier detection for unbalanced groups
deseq deseq2 outliers written 9 months ago by akaever20 • updated 9 months ago by Michael Love11k
0
votes
2
answers
327
views
2
answers
0
votes
2
answers
685
views
2
answers
Repeated Measures mRNA expression analysis II
limma edger deseq written 3.8 years ago by Charles Determan Jr140 • updated 9 months ago by wei.x.30
0
votes
2
answers
172
views
2
answers
DESeq2 with paired data
deseq written 10 months ago by l.weissenburgermoser0
0
votes
2
answers
813
views
2
answers
Use surrogate variables on DESeq2
deseq sva deseq2 differential gene expression written 20 months ago by aristotele_m10 • updated 10 months ago by szenitha0
1
vote
1
answer
457
views
1
answer
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