4
votes
1
answer
106
views
1
answer
6
votes
3
answers
2.4k
views
3
answers
Confused in the usage of formula in DESeq or DESeq2
deseq deseq2 written 2.7 years ago by skyoflcz10 • updated 15 days ago by bio200160
0
votes
1
answer
114
views
1
answer
DESeq2 - selective calculation of differential gene expression
deseq deseq2 written 24 days ago by LilithElina0 • updated 23 days ago by Michael Love12k
25
votes
2
answers
449
views
2
answers
0
votes
3
answers
536
views
3
answers
normalization factors for ChIP/RNA-IP-seq data
edger deseq written 5.5 years ago by mali salmon320 • updated 5 weeks ago by gaxusoh0
5
votes
3
answers
183
views
3
answers
P values from Deseq Analysis
deseq written 6 weeks ago by spawar20
5
votes
1
answer
143
views
1
answer
DESeq2: interaction term as in limma
limma deseq deseq2 interaction term written 8 weeks ago by sbcn40 • updated 8 weeks ago by Simon Anders3.3k
5
votes
2
answers
144
views
2
answers
3
votes
1
answer
311
views
1
answer
standard error value (lfcSE) returned by DeSeq2
deseq deseq2 standard error lfc lfcse written 3 months ago by tootiki0 • updated 11 weeks ago by rraadd_80
1
vote
1
answer
132
views
1
answer
diffHiC with no biological replicates?
deseq glm diffhic estimate dispersion value no replicates written 12 weeks ago by hwick10 • updated 12 weeks ago by Aaron Lun15k
3
votes
1
answer
183
views
1
answer
3
votes
1
answer
193
views
1
answer
What problem does the MA plot diagnose? And how do you solve it?
rnaseq deseq deseq2 written 3 months ago by ysdel10 • updated 3 months ago by Ryan C. Thompson5.7k
1
vote
1
answer
190
views
1
answer
0
votes
1
answer
166
views
1
answer
DESeq pvalue & padj
deseq written 4 months ago by manoharankumar010 • updated 4 months ago by Gavin Kelly180
0
votes
0
answers
135
views
0
answers
0
votes
1
answer
167
views
1
answer
How to remove genes with 0 counts in tximport?
deseq deseq2 tximport tximportdata written 4 months ago by Peter Alto0 • updated 4 months ago by Michael Love12k
0
votes
0
answers
158
views
0
answers
1
vote
2
answers
197
views
2
answers
0
votes
2
answers
1.9k
views
2
answers
DESeq2 multiple factors nested design
deseq deseq2 written 3.2 years ago by Guest User12k • updated 5 months ago by blawney0
0
votes
1
answer
150
views
1
answer
how to change color of points log2foldchange>1
deseq written 6 months ago by 130277160620 • updated 6 months ago by Wolfgang Huber13k
0
votes
1
answer
324
views
1
answer
Estimating group-specific dispersion in DESeq2
deseq deseq2 estimatedispersions written 7 months ago by bkellman0 • updated 7 months ago by Michael Love12k
2
votes
1
answer
250
views
1
answer
DESeq2 multifactor test using batch as one of the factor
deseq deseq2 written 9 months ago by vd4mmind0 • updated 9 months ago by Michael Love12k
0
votes
2
answers
1.0k
views
2
answers
2
votes
5
answers
276
views
5
answers
3
votes
2
answers
415
views
2
answers
Labeling points with hgnc symbols on the MA plot in DESeq2
deseq ma written 11 months ago by spark270 • updated 10 months ago by phil.chapman120
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