1
vote
1
answer
45
views
1
answer
extract HiC contacts for a given BEDPE set of coordinates
chromatin diffhic hic bedpe written 29 days ago by gryderart0 • updated 29 days ago by Aaron Lun21k
0
votes
2
answers
1.6k
views
2
answers
Error while processing BAM file with Picard FixMateInformation
diffhic written 2.9 years ago by koustav.pal0 • updated 10 months ago by geryk.jan0
2
votes
1
answer
186
views
1
answer
Inflating interactionSets into a contact matrix
diffhic hic interactionset contactmatrix inflate written 10 months ago by hwick120 • updated 10 months ago by Aaron Lun21k
0
votes
0
answers
253
views
0
answers
csaw intallation issue: cannot find "lib" in Rhtslib installation
csaw diffhic rhtslib written 11 months ago by favorov0 • updated 11 months ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
250
views
1
answer
How to get specific fragment/read interactions from HiC (diffHiC) data?
diffhic hic written 11 months ago by hwick120 • updated 11 months ago by Aaron Lun21k
0
votes
4
answers
318
views
4
answers
error running presplit_map.py
diffhic written 11 months ago by Eichan0
2
votes
2
answers
404
views
2
answers
2
votes
2
answers
387
views
2
answers
0
votes
1
answer
197
views
1
answer
0
votes
1
answer
332
views
1
answer
min enrichment in peak calling with diffHiC?
diffhic peak written 17 months ago by hwick120 • updated 17 months ago by Aaron Lun21k
2
votes
1
answer
384
views
1
answer
diffHiC with no biological replicates?
deseq glm diffhic estimate dispersion value no replicates written 18 months ago by hwick120 • updated 18 months ago by Aaron Lun21k
0
votes
1
answer
359
views
1
answer
diffHic count data
diffhic written 19 months ago by kamal.fartiyal8410 • updated 19 months ago by Aaron Lun21k
2
votes
1
answer
293
views
1
answer
diffHic: minimum counts per bin
edger diffhic written 21 months ago by andreucat910
5
votes
2
answers
694
views
2
answers
1
vote
1
answer
307
views
1
answer
Removing trended biases between HiC libraries
diffhic written 22 months ago by Darya Vanichkina100 • updated 22 months ago by Aaron Lun21k
1
vote
1
answer
304
views
1
answer
Interpreting strand orientation plots in diffHic
diffhic written 22 months ago by Darya Vanichkina100 • updated 22 months ago by Aaron Lun21k
1
vote
1
answer
406
views
1
answer
Problem in finding NB dispersion for my HiC datasets
diffhic written 23 months ago by manjulathimma0 • updated 23 months ago by James W. MacDonald47k
0
votes
2
answers
296
views
2
answers
Error in plotDI in pacakge diffHic
diffhic plotdi written 2.0 years ago by Andrew0
0
votes
1
answer
316
views
1
answer
How to run plotPlaid in diffHic Package using output from hic Pro
diffhic plotplaid written 2.0 years ago by Andrew0 • updated 2.0 years ago by Aaron Lun21k
1
vote
3
answers
385
views
3
answers
0
votes
2
answers
300
views
2
answers
1
vote
2
answers
396
views
2
answers
1
vote
1
answer
388
views
1
answer
0
votes
2
answers
381
views
2
answers
diffHic: alternative input?
diffhic written 2.2 years ago by chiara.a.nicoletti0
0
votes
1
answer
342
views
1
answer
diffHic preparePairs function
diffhic written 2.2 years ago by lwtan900 • updated 2.2 years ago by Aaron Lun21k
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