Showing: diffhicreset
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diffHic ICE normalization PCA with NAs
normalization pca diffhic hi-c nas written 9 weeks ago by inzirio10 • updated 9 weeks ago by Aaron Lun24k
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from denove contig assembly to chromosome bins
gothic diffhic hic hic-c hicup written 6 months ago by mictadlo0 • updated 6 months ago by Aaron Lun24k
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Pre-processing for diffHiC
diffhic written 8 months ago by James W. MacDonald50k • updated 8 months ago by Aaron Lun24k
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extract HiC contacts for a given BEDPE set of coordinates
chromatin diffhic hic bedpe written 10 months ago by gryderart0 • updated 10 months ago by Aaron Lun24k
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Error while processing BAM file with Picard FixMateInformation
diffhic written 3.6 years ago by koustav.pal0 • updated 19 months ago by geryk.jan0
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Inflating interactionSets into a contact matrix
diffhic hic interactionset contactmatrix inflate written 19 months ago by hwick120 • updated 19 months ago by Aaron Lun24k
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csaw intallation issue: cannot find "lib" in Rhtslib installation
csaw diffhic rhtslib written 20 months ago by favorov0 • updated 20 months ago by Martin Morgan ♦♦ 23k
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How to get specific fragment/read interactions from HiC (diffHiC) data?
diffhic hic written 20 months ago by hwick120 • updated 20 months ago by Aaron Lun24k
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509
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error running presplit_map.py
diffhic written 20 months ago by Eichan0
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min enrichment in peak calling with diffHiC?
diffhic peak written 2.2 years ago by hwick120 • updated 2.2 years ago by Aaron Lun24k
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diffHiC with no biological replicates?
deseq glm diffhic estimate dispersion value no replicates written 2.2 years ago by hwick120 • updated 2.2 years ago by Aaron Lun24k
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diffHic count data
diffhic written 2.4 years ago by kamal.fartiyal8410 • updated 2.4 years ago by Aaron Lun24k
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diffHic: minimum counts per bin
edger diffhic written 2.5 years ago by andreucat910
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Removing trended biases between HiC libraries
diffhic written 2.6 years ago by Darya Vanichkina110 • updated 2.6 years ago by Aaron Lun24k
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408
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Interpreting strand orientation plots in diffHic
diffhic written 2.6 years ago by Darya Vanichkina110 • updated 2.6 years ago by Aaron Lun24k
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Problem in finding NB dispersion for my HiC datasets
diffhic written 2.7 years ago by manjulathimma0 • updated 2.7 years ago by James W. MacDonald50k
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408
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Error in plotDI in pacakge diffHic
diffhic plotdi written 2.8 years ago by Andrew0
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How to run plotPlaid in diffHic Package using output from hic Pro
diffhic plotplaid written 2.8 years ago by Andrew0 • updated 2.8 years ago by Aaron Lun24k
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