0
votes
1
answer
60
views
1
answer
Pre-processing for diffHiC
diffhic written 6 weeks ago by James W. MacDonald48k • updated 6 weeks ago by Aaron Lun21k
1
vote
1
answer
80
views
1
answer
extract HiC contacts for a given BEDPE set of coordinates
chromatin diffhic hic bedpe written 3 months ago by gryderart0 • updated 3 months ago by Aaron Lun21k
0
votes
2
answers
1.7k
views
2
answers
Error while processing BAM file with Picard FixMateInformation
diffhic written 3.1 years ago by koustav.pal0 • updated 12 months ago by geryk.jan0
2
votes
1
answer
219
views
1
answer
Inflating interactionSets into a contact matrix
diffhic hic interactionset contactmatrix inflate written 13 months ago by hwick120 • updated 13 months ago by Aaron Lun21k
0
votes
0
answers
300
views
0
answers
csaw intallation issue: cannot find "lib" in Rhtslib installation
csaw diffhic rhtslib written 13 months ago by favorov0 • updated 13 months ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
315
views
1
answer
How to get specific fragment/read interactions from HiC (diffHiC) data?
diffhic hic written 13 months ago by hwick120 • updated 13 months ago by Aaron Lun21k
0
votes
4
answers
382
views
4
answers
error running presplit_map.py
diffhic written 14 months ago by Eichan0
2
votes
2
answers
432
views
2
answers
2
votes
2
answers
494
views
2
answers
0
votes
1
answer
222
views
1
answer
0
votes
1
answer
366
views
1
answer
min enrichment in peak calling with diffHiC?
diffhic peak written 19 months ago by hwick120 • updated 19 months ago by Aaron Lun21k
2
votes
1
answer
433
views
1
answer
diffHiC with no biological replicates?
deseq glm diffhic estimate dispersion value no replicates written 20 months ago by hwick120 • updated 20 months ago by Aaron Lun21k
0
votes
1
answer
385
views
1
answer
diffHic count data
diffhic written 22 months ago by kamal.fartiyal8410 • updated 22 months ago by Aaron Lun21k
2
votes
1
answer
343
views
1
answer
diffHic: minimum counts per bin
edger diffhic written 24 months ago by andreucat910
5
votes
2
answers
850
views
2
answers
1
vote
1
answer
328
views
1
answer
Removing trended biases between HiC libraries
diffhic written 2.1 years ago by Darya Vanichkina100 • updated 2.1 years ago by Aaron Lun21k
1
vote
1
answer
336
views
1
answer
Interpreting strand orientation plots in diffHic
diffhic written 2.1 years ago by Darya Vanichkina100 • updated 2.1 years ago by Aaron Lun21k
1
vote
1
answer
442
views
1
answer
Problem in finding NB dispersion for my HiC datasets
diffhic written 2.2 years ago by manjulathimma0 • updated 2.2 years ago by James W. MacDonald48k
0
votes
2
answers
331
views
2
answers
Error in plotDI in pacakge diffHic
diffhic plotdi written 2.2 years ago by Andrew0
0
votes
1
answer
349
views
1
answer
How to run plotPlaid in diffHic Package using output from hic Pro
diffhic plotplaid written 2.2 years ago by Andrew0 • updated 2.2 years ago by Aaron Lun21k
1
vote
3
answers
410
views
3
answers
0
votes
2
answers
326
views
2
answers
1
vote
2
answers
446
views
2
answers
1
vote
1
answer
433
views
1
answer
0
votes
2
answers
416
views
2
answers
diffHic: alternative input?
diffhic written 2.4 years ago by chiara.a.nicoletti0
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