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1
vote
1
answer
130
views
1
answer
gseDO function input
clusterprofiler dose written 7 days ago by xr2120 • 0 • updated 7 days ago by Guangchuang Yu • 690
0
votes
1
answer
141
views
1
answer
Failed to install 'DOSE' package. Win10, 'single candle'
dose package installation windows10 written 6 weeks ago by Yisong Zhen • 200
1
vote
1
answer
157
views
1
answer
Subset of genes can find a term but whole set cannot
biomart dose written 10 weeks ago by ankita.mandal28529 • 0 • updated 10 weeks ago by James W. MacDonald ♦ 44k
2
votes
1
answer
228
views
1
answer
Need help setting up DESeq2 complex model for multi-dose experiment
dose deseq2 multiple time points written 6 months ago by stwestreich • 0 • updated 6 months ago by Michael Love ♦ 13k
1
vote
0
answers
205
views
0
answers
ReactomePA viewPathway DE node and legend colour
dose reactomepa written 7 months ago by Kajus Baidžajevas • 10
4
votes
1
answer
200
views
1
answer
BiocParallel: object export issue
dose biocparallel written 9 months ago by Guido Hooiveld • 2.1k • updated 9 months ago by Martin Morgan ♦♦ 20k
2
votes
3
answers
400
views
3
answers
leading edge analysis clusterProfiler DOSE custom GSEA
clusterprofiler dose gsea_internal user_data leading edge analysis written 10 months ago by Riba Michela • 80
4
votes
1
answer
301
views
1
answer
Clarifications on p-values in enrichResult objects
clusterprofiler dose reactomepa written 11 months ago by enricoferrero • 550 • updated 11 months ago by Guangchuang Yu • 690
0
votes
0
answers
345
views
0
answers
Modifying the legend in cnetplot function
clusterprofiler dose written 20 months ago by Vinicius Henrique da Silva • 20
1
vote
1
answer
440
views
1
answer
Treatment dose in treatment-control RNA-seq
edger dose deseq2 rna-seq written 21 months ago by JacobK • 0 • updated 21 months ago by Aaron Lun • 15k
0
votes
0
answers
482
views
0
answers
DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
genesetenrichment gosemsim dose enrichment written 2.7 years ago by Guangchuang Yu • 690
0
votes
1
answer
422
views
1
answer
strange log2FoldChange estimates
rnaseq dose deseq2 written 3.0 years ago by Shi, Tao • 720
0
votes
2
answers
605
views
2
answers
question about design for limma time course, 2 conditions and drug treatment microarray experiment
microarray dose written 3.7 years ago by Guest User • 12k • updated 3.7 years ago by Pekka Kohonen • 180
0
votes
0
answers
569
views
0
answers
question about design for limma time course, 2 conditions and drug treatment microarray experiment
microarray limma dose written 3.7 years ago by Gordon Smyth ♦ 31k
0
votes
0
answers
370
views
0
answers
Error in clusterProfiler package with function \"setReadable<-\"
go cancer rgraphviz clusterprofiler dose written 4.1 years ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
487
views
1
answer
Error in clusterProfiler package with function \"setReadable<-\"
go clusterprofiler dose written 4.1 years ago by Guest User • 12k • updated 4.1 years ago by Dan Tenenbaum ♦♦ 8.1k
0
votes
0
answers
339
views
0
answers
Identifying expression trends in RNA-seq experiment - through edgeR
edger dose written 4.1 years ago by Sandhya Pemmasani Kiran • 40
0
votes
1
answer
704
views
1
answer
Question on unbalanced paired design
microarray normalization go limma dose written 4.4 years ago by Sandhya Pemmasani Kiran • 40 • updated 4.4 years ago by Ryan C. Thompson ♦ 5.9k
0
votes
1
answer
328
views
1
answer
about limma linear models
microarray limma dose written 6.3 years ago by Gordon Smyth ♦ 31k • updated 6.3 years ago by sense_0109 • 40
0
votes
1
answer
431
views
1
answer
LIMMA: donor effect
microarray limma dose written 6.3 years ago by Gordon Smyth ♦ 31k • updated 6.3 years ago by fire1976 wyoming • 370
0
votes
0
answers
495
views
0
answers
PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
annotation cdf probe affy oligo xps dose written 6.7 years ago by Roman Jaksik • 10
0
votes
2
answers
406
views
2
answers
FW: PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
annotation cdf probe affy oligo xps dose written 6.7 years ago by Ramil Nurtdinov • 10 • updated 6.7 years ago by branislav misovic • 120
0
votes
2
answers
419
views
2
answers
PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
annotation cdf probe affy oligo xps dose written 6.7 years ago by branislav misovic • 120 • updated 6.7 years ago by Benilton Carvalho • 4.2k
0
votes
2
answers
811
views
2
answers
Regression using LIMMA
affy limma dose written 6.8 years ago by fire1976 wyoming • 370 • updated 6.8 years ago by Naomi Altman • 6.0k
0
votes
1
answer
425
views
1
answer
limma: writing down the matrix in an almost (?) factorial design experiment
microarray dose written 7.5 years ago by Massimo Pinto • 390
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