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0
votes
0
answers
66
views
0
answers
Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
dose enrichmap enrichment map emapplot enrichplot written 7 days ago by jan.soderman • 0
1
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0
answers
132
views
0
answers
dotplot in DOSE
dose compilation error written 7 weeks ago by alper.kucukural • 10
0
votes
1
answer
206
views
1
answer
Reference for edge and node properties suitable for enrichMap{DOSE}
dose reactomepa enrichmap enrichpathway written 4 months ago by jan.soderman • 0 • updated 4 months ago by Guangchuang Yu • 990
2
votes
1
answer
328
views
1
answer
enrichGO from DOSE, clusterprofiler is returning empty result.
annotation clusterprofiler dose gene ontology gene set enrichment written 7 months ago by kirannbishwa01 • 0 • updated 7 months ago by Guangchuang Yu • 990
1
vote
1
answer
582
views
1
answer
gseDO function input
clusterprofiler dose written 10 months ago by xr2120 • 0 • updated 10 months ago by Guangchuang Yu • 990
0
votes
1
answer
299
views
1
answer
Failed to install 'DOSE' package. Win10, 'single candle'
dose package installation windows10 written 11 months ago by Yisong Zhen • 200
1
vote
1
answer
308
views
1
answer
Subset of genes can find a term but whole set cannot
biomart dose written 12 months ago by ankita.mandal28529 • 0 • updated 12 months ago by James W. MacDonald ♦ 46k
2
votes
1
answer
372
views
1
answer
Need help setting up DESeq2 complex model for multi-dose experiment
dose deseq2 multiple time points written 16 months ago by stwestreich • 0 • updated 16 months ago by Michael Love ♦ 18k
1
vote
0
answers
362
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0
answers
ReactomePA viewPathway DE node and legend colour
dose reactomepa written 17 months ago by Kajus Baidžajevas • 10
4
votes
1
answer
391
views
1
answer
BiocParallel: object export issue
dose biocparallel written 20 months ago by Guido Hooiveld • 2.3k • updated 20 months ago by Martin Morgan ♦♦ 21k
2
votes
3
answers
661
views
3
answers
leading edge analysis clusterProfiler DOSE custom GSEA
clusterprofiler dose gsea_internal user_data leading edge analysis written 20 months ago by Riba Michela • 80
4
votes
1
answer
422
views
1
answer
Clarifications on p-values in enrichResult objects
clusterprofiler dose reactomepa written 21 months ago by enricoferrero • 560 • updated 21 months ago by Guangchuang Yu • 990
0
votes
0
answers
586
views
0
answers
Modifying the legend in cnetplot function
clusterprofiler dose written 2.5 years ago by Vinicius Henrique da Silva • 20
1
vote
1
answer
608
views
1
answer
Treatment dose in treatment-control RNA-seq
edger dose deseq2 rna-seq written 2.6 years ago by JacobK • 0 • updated 2.6 years ago by Aaron Lun • 19k
0
votes
0
answers
656
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0
answers
DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
genesetenrichment gosemsim dose enrichment written 3.6 years ago by Guangchuang Yu • 990
0
votes
1
answer
513
views
1
answer
strange log2FoldChange estimates
rnaseq dose deseq2 written 3.8 years ago by Shi, Tao • 720
0
votes
2
answers
800
views
2
answers
question about design for limma time course, 2 conditions and drug treatment microarray experiment
microarray dose written 4.6 years ago by Guest User • 12k • updated 4.6 years ago by Pekka Kohonen • 190
0
votes
0
answers
828
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0
answers
question about design for limma time course, 2 conditions and drug treatment microarray experiment
microarray limma dose written 4.6 years ago by Gordon Smyth ♦ 33k
0
votes
0
answers
523
views
0
answers
Error in clusterProfiler package with function \"setReadable<-\"
go cancer rgraphviz clusterprofiler dose written 4.9 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
676
views
1
answer
Error in clusterProfiler package with function \"setReadable<-\"
go clusterprofiler dose written 5.0 years ago by Guest User • 12k • updated 5.0 years ago by Dan Tenenbaum ♦♦ 8.2k
0
votes
0
answers
405
views
0
answers
Identifying expression trends in RNA-seq experiment - through edgeR
edger dose written 5.0 years ago by Sandhya Pemmasani Kiran • 40
0
votes
1
answer
928
views
1
answer
Question on unbalanced paired design
microarray normalization go limma dose written 5.2 years ago by Sandhya Pemmasani Kiran • 40 • updated 5.2 years ago by Ryan C. Thompson ♦ 6.8k
0
votes
1
answer
459
views
1
answer
about limma linear models
microarray limma dose written 7.1 years ago by Gordon Smyth ♦ 33k • updated 7.1 years ago by sense_0109 • 40
0
votes
1
answer
560
views
1
answer
LIMMA: donor effect
microarray limma dose written 7.2 years ago by Gordon Smyth ♦ 33k • updated 7.2 years ago by fire1976 wyoming • 370
0
votes
0
answers
641
views
0
answers
PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
annotation cdf probe affy oligo xps dose written 7.5 years ago by Roman Jaksik • 10
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