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0
votes
0
answers
119
views
0
answers
Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
dose enrichmap enrichment map emapplot enrichplot written 9 weeks ago by jan.soderman • 0
1
vote
0
answers
161
views
0
answers
dotplot in DOSE
dose compilation error written 3 months ago by alper.kucukural • 10
0
votes
1
answer
248
views
1
answer
Reference for edge and node properties suitable for enrichMap{DOSE}
dose reactomepa enrichmap enrichpathway written 6 months ago by jan.soderman • 0 • updated 6 months ago by Guangchuang Yu • 1.0k
2
votes
1
answer
402
views
1
answer
enrichGO from DOSE, clusterprofiler is returning empty result.
annotation clusterprofiler dose gene ontology gene set enrichment written 9 months ago by kirannbishwa01 • 0 • updated 9 months ago by Guangchuang Yu • 1.0k
1
vote
1
answer
606
views
1
answer
gseDO function input
clusterprofiler dose written 12 months ago by xr2120 • 0 • updated 12 months ago by Guangchuang Yu • 1.0k
0
votes
1
answer
332
views
1
answer
Failed to install 'DOSE' package. Win10, 'single candle'
dose package installation windows10 written 13 months ago by Yisong Zhen • 200
1
vote
1
answer
333
views
1
answer
Subset of genes can find a term but whole set cannot
biomart dose written 14 months ago by ankita.mandal28529 • 0 • updated 14 months ago by James W. MacDonald ♦ 47k
2
votes
1
answer
401
views
1
answer
Need help setting up DESeq2 complex model for multi-dose experiment
dose deseq2 multiple time points written 18 months ago by stwestreich • 0 • updated 18 months ago by Michael Love ♦ 19k
1
vote
0
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386
views
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answers
ReactomePA viewPathway DE node and legend colour
dose reactomepa written 19 months ago by Kajus Baidžajevas • 10
4
votes
1
answer
421
views
1
answer
BiocParallel: object export issue
dose biocparallel written 21 months ago by Guido Hooiveld • 2.3k • updated 21 months ago by Martin Morgan ♦♦ 22k
2
votes
3
answers
715
views
3
answers
leading edge analysis clusterProfiler DOSE custom GSEA
clusterprofiler dose gsea_internal user_data leading edge analysis written 22 months ago by Riba Michela • 80
4
votes
1
answer
443
views
1
answer
Clarifications on p-values in enrichResult objects
clusterprofiler dose reactomepa written 23 months ago by enricoferrero • 570 • updated 23 months ago by Guangchuang Yu • 1.0k
0
votes
0
answers
637
views
0
answers
Modifying the legend in cnetplot function
clusterprofiler dose written 2.7 years ago by Vinicius Henrique da Silva • 20
1
vote
1
answer
632
views
1
answer
Treatment dose in treatment-control RNA-seq
edger dose deseq2 rna-seq written 2.8 years ago by JacobK • 0 • updated 2.8 years ago by Aaron Lun • 20k
0
votes
0
answers
681
views
0
answers
DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
genesetenrichment gosemsim dose enrichment written 3.7 years ago by Guangchuang Yu • 1.0k
0
votes
1
answer
536
views
1
answer
strange log2FoldChange estimates
rnaseq dose deseq2 written 4.0 years ago by Shi, Tao • 720
0
votes
2
answers
827
views
2
answers
question about design for limma time course, 2 conditions and drug treatment microarray experiment
microarray dose written 4.7 years ago by Guest User • 12k • updated 4.7 years ago by Pekka Kohonen • 190
0
votes
0
answers
859
views
0
answers
question about design for limma time course, 2 conditions and drug treatment microarray experiment
microarray limma dose written 4.7 years ago by Gordon Smyth ♦ 34k
0
votes
0
answers
547
views
0
answers
Error in clusterProfiler package with function \"setReadable<-\"
go cancer rgraphviz clusterprofiler dose written 5.1 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
708
views
1
answer
Error in clusterProfiler package with function \"setReadable<-\"
go clusterprofiler dose written 5.1 years ago by Guest User • 12k • updated 5.1 years ago by Dan Tenenbaum ♦♦ 8.2k
0
votes
0
answers
417
views
0
answers
Identifying expression trends in RNA-seq experiment - through edgeR
edger dose written 5.1 years ago by Sandhya Pemmasani Kiran • 40
0
votes
1
answer
957
views
1
answer
Question on unbalanced paired design
microarray normalization go limma dose written 5.4 years ago by Sandhya Pemmasani Kiran • 40 • updated 5.4 years ago by Ryan C. Thompson ♦ 6.8k
0
votes
1
answer
481
views
1
answer
about limma linear models
microarray limma dose written 7.2 years ago by Gordon Smyth ♦ 34k • updated 7.2 years ago by sense_0109 • 40
0
votes
1
answer
585
views
1
answer
LIMMA: donor effect
microarray limma dose written 7.3 years ago by Gordon Smyth ♦ 34k • updated 7.3 years ago by fire1976 wyoming • 370
0
votes
0
answers
661
views
0
answers
PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
annotation cdf probe affy oligo xps dose written 7.7 years ago by Roman Jaksik • 10
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