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Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
dose enrichmap enrichment map emapplot enrichplot written 7 months ago by jan.soderman • 0
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dotplot in DOSE
dose compilation error written 9 months ago by alper.kucukural • 10
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Reference for edge and node properties suitable for enrichMap{DOSE}
dose reactomepa enrichmap enrichpathway written 12 months ago by jan.soderman • 0 • updated 12 months ago by Guangchuang Yu • 1.1k
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enrichGO from DOSE, clusterprofiler is returning empty result.
annotation clusterprofiler dose gene ontology gene set enrichment written 14 months ago by kirannbishwa01 • 0 • updated 14 months ago by Guangchuang Yu • 1.1k
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gseDO function input
clusterprofiler dose written 17 months ago by xr2120 • 0 • updated 17 months ago by Guangchuang Yu • 1.1k
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406
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Failed to install 'DOSE' package. Win10, 'single candle'
dose package installation windows10 written 18 months ago by Yisong Zhen • 200
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Subset of genes can find a term but whole set cannot
biomart dose written 19 months ago by ankita.mandal28529 • 0 • updated 19 months ago by James W. MacDonald ♦ 49k
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Need help setting up DESeq2 complex model for multi-dose experiment
dose deseq2 multiple time points written 23 months ago by stwestreich • 0 • updated 23 months ago by Michael Love ♦ 21k
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ReactomePA viewPathway DE node and legend colour
dose reactomepa written 2.0 years ago by Kajus Baidžajevas • 10
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502
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BiocParallel: object export issue
dose biocparallel written 2.2 years ago by Guido Hooiveld • 2.4k • updated 2.2 years ago by Martin Morgan ♦♦ 22k
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3
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leading edge analysis clusterProfiler DOSE custom GSEA
clusterprofiler dose gsea_internal user_data leading edge analysis written 2.3 years ago by Riba Michela • 80
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Clarifications on p-values in enrichResult objects
clusterprofiler dose reactomepa written 2.4 years ago by enricoferrero • 570 • updated 2.4 years ago by Guangchuang Yu • 1.1k
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Modifying the legend in cnetplot function
clusterprofiler dose written 3.1 years ago by Vinicius Henrique da Silva • 20
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Treatment dose in treatment-control RNA-seq
edger dose deseq2 rna-seq written 3.2 years ago by JacobK • 0 • updated 3.2 years ago by Aaron Lun • 22k
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DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
genesetenrichment gosemsim dose enrichment written 4.2 years ago by Guangchuang Yu • 1.1k
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strange log2FoldChange estimates
rnaseq dose deseq2 written 4.4 years ago by Shi, Tao • 720
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question about design for limma time course, 2 conditions and drug treatment microarray experiment
microarray dose written 5.2 years ago by Guest User • 12k • updated 5.2 years ago by Pekka Kohonen • 190
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question about design for limma time course, 2 conditions and drug treatment microarray experiment
microarray limma dose written 5.2 years ago by Gordon Smyth ♦ 36k
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Error in clusterProfiler package with function \"setReadable<-\"
go cancer rgraphviz clusterprofiler dose written 5.5 years ago by Martin Morgan ♦♦ 22k
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Error in clusterProfiler package with function \"setReadable<-\"
go clusterprofiler dose written 5.5 years ago by Guest User • 12k • updated 5.5 years ago by Dan Tenenbaum • 8.2k
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Identifying expression trends in RNA-seq experiment - through edgeR
edger dose written 5.6 years ago by Sandhya Pemmasani Kiran • 40
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Question on unbalanced paired design
microarray normalization go limma dose written 5.8 years ago by Sandhya Pemmasani Kiran • 40 • updated 5.8 years ago by Ryan C. Thompson ♦ 7.1k
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535
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about limma linear models
microarray limma dose written 7.7 years ago by Gordon Smyth ♦ 36k • updated 7.7 years ago by sense_0109 • 40
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668
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LIMMA: donor effect
microarray limma dose written 7.8 years ago by Gordon Smyth ♦ 36k • updated 7.8 years ago by fire1976 wyoming • 380
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PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
annotation cdf probe affy oligo xps dose written 8.1 years ago by Roman • 10
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