ensemblvep Posts

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questions when installing 'Ensembl VEP' and R package 'ensemblVEP'

ensemblvep R gene annotation variant effect predictor ensembl vep written 3 months ago by ycchang • 0

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200

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Error in VCF parsing with VariantAnnotation

variantannotation ensemblvep software error written 7 months ago by mumichae • 20 • updated 7 months ago by Valerie Obenchain • 6.7k

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279

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ensemblVEP: "Ensembl VEP is not installed in your path."

ensemblvep software error written 7 months ago by patrick.turko • 10 • updated 7 months ago by Martin Morgan ♦♦ 23k

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320

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ensemblVEP supported versions, and troubleshooting

ensemblvep written 19 months ago by Janet Young • 730 • updated 19 months ago by shepherl ♦♦ 1.6k

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488

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error using ensemblVEP v88 when querying rs67418256 with basic(param_vep)$everything=TRUE

ensemblvep written 2.4 years ago by mlrubio • 0

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708

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problem using ensemblVEP with GRC37

ensemblvep grch37 written 2.4 years ago by mikko.arvas • 0

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362

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ensemblVEP problem with MySQL database

ensemblvep written 3.2 years ago by clairelsimpson • 10

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515

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parseCSQToGRanges() : mcols are all factors, despite some numeric fields

ensemblvep written 3.4 years ago by kevin.rue • 230 • updated 3.4 years ago by Martin Morgan ♦♦ 23k

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1.3k

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ensemblVEP support for Ensembl API version 78

ensemblvep written 4.8 years ago by Moiz Bootwalla • 50 • updated 4.8 years ago by Valerie Obenchain • 6.7k

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1.2k

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ensemblVEP, variant_effect_predictor versions and release schedule

transcription hapmap polyphen sift convert genomes ensemblvep written 5.8 years ago by Thomas Sandmann • 30 • updated 5.8 years ago by Valerie Obenchain • 6.7k

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ensemblVEP, variant_effect_predictor versions and release schedule

cancer mlinterfaces bridge ensemblvep annotationhub written 5.8 years ago by Valerie Obenchain • 6.7k

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564

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zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*

variantannotation annotation polyphen sift annotate ensemblvep written 5.9 years ago by Valerie Obenchain • 6.7k

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718

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ensemblVEP, variant_effect_predictor versions and release schedule

ensemblvep written 6.0 years ago by Guest User • 12k • updated 6.0 years ago by Valerie Obenchain • 6.7k

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999

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ensemblVEP: passing on coverage / frequency information

coverage varianttools ensemblvep written 6.5 years ago by Guest User • 12k • updated 6.5 years ago by Valerie Obenchain • 6.7k