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questions when installing 'Ensembl VEP' and R package 'ensemblVEP'
ensemblvep R gene annotation variant effect predictor ensembl vep written 4 months ago by ycchang • 0
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229
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Error in VCF parsing with VariantAnnotation
variantannotation ensemblvep software error written 9 months ago by mumichae • 20 • updated 9 months ago by Valerie Obenchain • 6.7k
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ensemblVEP: "Ensembl VEP is not installed in your path."
ensemblvep software error written 9 months ago by patrick.turko • 10 • updated 9 months ago by Martin Morgan ♦♦ 24k
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ensemblVEP supported versions, and troubleshooting
ensemblvep written 21 months ago by Janet Young • 740 • updated 21 months ago by shepherl ♦♦ 1.7k
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error using ensemblVEP v88 when querying rs67418256 with basic(param_vep)$everything=TRUE
ensemblvep written 2.6 years ago by mlrubio • 0
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problem using ensemblVEP with GRC37
ensemblvep grch37 written 2.6 years ago by mikko.arvas • 0
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ensemblVEP problem with MySQL database
ensemblvep written 3.3 years ago by clairelsimpson • 10
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parseCSQToGRanges() : mcols are all factors, despite some numeric fields
ensemblvep written 3.6 years ago by kevin.rue • 230 • updated 3.6 years ago by Martin Morgan ♦♦ 24k
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ensemblVEP support for Ensembl API version 78
ensemblvep written 5.0 years ago by Moiz Bootwalla • 50 • updated 5.0 years ago by Valerie Obenchain • 6.7k
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ensemblVEP, variant_effect_predictor versions and release schedule
transcription hapmap polyphen sift convert genomes ensemblvep written 5.9 years ago by Thomas Sandmann • 30 • updated 5.9 years ago by Valerie Obenchain • 6.7k
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ensemblVEP, variant_effect_predictor versions and release schedule
cancer mlinterfaces bridge ensemblvep annotationhub written 6.0 years ago by Valerie Obenchain • 6.7k
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zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
variantannotation annotation polyphen sift annotate ensemblvep written 6.1 years ago by Valerie Obenchain • 6.7k
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ensemblVEP, variant_effect_predictor versions and release schedule
ensemblvep written 6.2 years ago by Guest User • 12k • updated 6.2 years ago by Valerie Obenchain • 6.7k
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ensemblVEP: passing on coverage / frequency information
coverage varianttools ensemblvep written 6.7 years ago by Guest User • 12k • updated 6.7 years ago by Valerie Obenchain • 6.7k
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