Showing: genomicalignmentsreset
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How to query a base along an aligned read by genomic position?
genomicalignments bam cigar written 6 weeks ago by Shian Su20 • updated 5 weeks ago by Janet Young740
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Mimic Counting of HTSeq-count Using countOverlaps
genomicalignments countoverlaps written 6 months ago by Dario Strbenac1.5k • updated 6 months ago by Martin Morgan ♦♦ 24k
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summarizeOverlaps bplapply error in DeSeq2 pipeline
genomicalignments R summarizeoverlaps written 6 months ago by cavery0 • updated 6 months ago by Martin Morgan ♦♦ 24k
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Error in summarizeOverlaps
genomicalignments written 8 months ago by mahmudornob0 • updated 8 months ago by James W. MacDonald52k
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Iterating over BAM file by genomic chunk
genomicalignments written 8 months ago by James W. MacDonald52k • updated 8 months ago by Martin Morgan ♦♦ 24k
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indexBam(), summarizeOverlaps() error: RNA-seq
rsamtools genomicalignments rna-seq written 10 months ago by mat14940 • updated 10 months ago by Mike Smith4.0k
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Efficient counting of nucleotide changes in short-reads
biostrings genomicalignments written 12 months ago by Robert Castelo2.3k • updated 12 months ago by Michael Lawrence11k
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Subset bam file in R
genomicranges rsamtools genomicalignments written 12 months ago by ferbecneu0 • updated 12 months ago by Michael Lawrence11k
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How to parse supplementary (not secondary) alignments
rsamtools genomicalignments written 16 months ago by marco10 • updated 16 months ago by Martin Morgan ♦♦ 24k
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