Showing: genomicalignmentsreset
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Error in summarizeOverlaps
genomicalignments written 22 days ago by mahmudornob0 • updated 21 days ago by James W. MacDonald49k
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59
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Iterating over BAM file by genomic chunk
genomicalignments written 23 days ago by James W. MacDonald49k • updated 23 days ago by Martin Morgan ♦♦ 23k
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indexBam(), summarizeOverlaps() error: RNA-seq
rsamtools genomicalignments rna-seq written 9 weeks ago by mat14940 • updated 9 weeks ago by Mike Smith3.4k
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Efficient counting of nucleotide changes in short-reads
biostrings genomicalignments written 4 months ago by Robert Castelo2.3k • updated 4 months ago by Michael Lawrence11k
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131
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Subset bam file in R
genomicranges rsamtools genomicalignments written 4 months ago by ferbecneu0 • updated 4 months ago by Michael Lawrence11k
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How to parse supplementary (not secondary) alignments
rsamtools genomicalignments written 8 months ago by marco10 • updated 8 months ago by Martin Morgan ♦♦ 23k
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FDR adjustment in Time-Course DATA DESEQ2
deseq2 genomicalignments fdrtool written 18 months ago by jakob.petereit20 • updated 18 months ago by Michael Love23k
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5
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468
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NGS with summarizeOverlaps and SAM files
genomicalignments written 23 months ago by sergiogalvezrojas0 • updated 23 months ago by James W. MacDonald49k
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How are duplicates determined with readGAlignments/scanBam?
rsamtools genomicalignments written 2.1 years ago by jfiksel30 • updated 2.1 years ago by Mike Smith3.4k
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Integer overflow when tabulating read coverage
genomicranges genomicalignments written 2.2 years ago by jma199130 • updated 2.2 years ago by Michael Lawrence11k
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