Showing: genomicalignmentsreset
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Mimic Counting of HTSeq-count Using countOverlaps
genomicalignments countoverlaps written 20 days ago by Dario Strbenac1.4k • updated 20 days ago by Martin Morgan ♦♦ 23k
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summarizeOverlaps bplapply error in DeSeq2 pipeline
genomicalignments R summarizeoverlaps written 21 days ago by cavery0 • updated 21 days ago by Martin Morgan ♦♦ 23k
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Error in summarizeOverlaps
genomicalignments written 11 weeks ago by mahmudornob0 • updated 11 weeks ago by James W. MacDonald50k
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Iterating over BAM file by genomic chunk
genomicalignments written 11 weeks ago by James W. MacDonald50k • updated 11 weeks ago by Martin Morgan ♦♦ 23k
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indexBam(), summarizeOverlaps() error: RNA-seq
rsamtools genomicalignments rna-seq written 4 months ago by mat14940 • updated 4 months ago by Mike Smith3.7k
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Efficient counting of nucleotide changes in short-reads
biostrings genomicalignments written 6 months ago by Robert Castelo2.3k • updated 6 months ago by Michael Lawrence11k
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Subset bam file in R
genomicranges rsamtools genomicalignments written 6 months ago by ferbecneu0 • updated 6 months ago by Michael Lawrence11k
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How to parse supplementary (not secondary) alignments
rsamtools genomicalignments written 10 months ago by marco10 • updated 10 months ago by Martin Morgan ♦♦ 23k
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FDR adjustment in Time-Course DATA DESEQ2
deseq2 genomicalignments fdrtool written 20 months ago by jakob.petereit20 • updated 20 months ago by Michael Love24k
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NGS with summarizeOverlaps and SAM files
genomicalignments written 2.1 years ago by sergiogalvezrojas0 • updated 2.1 years ago by James W. MacDonald50k
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