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Testing Interactions without an interaction term in the design formula
deseq2 interactions written 11 weeks ago by colaneri • 30 • updated 11 weeks ago by Michael Love ♦ 24k
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DESeq2 lfcShrink with interactions
deseq2 interactions lfcshrink written 4 months ago by hannepainter • 0 • updated 4 months ago by Michael Love ♦ 24k
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Splitting a dataset and control sample batch
deseq2 interactions batch effect correction grouping variable written 8 months ago by mat.lesche • 70 • updated 8 months ago by Michael Love ♦ 24k
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RNA-seq time course experiment - DESEq2 Contrasts
deseq2 interactions contrast rna-seq written 9 months ago by Maithê Barros • 10 • updated 9 months ago by Michael Love ♦ 24k
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DESeq2 multifactor design, interpreting interaction names
deseq2 interactions multifactorial design written 10 months ago by fargo • 0 • updated 10 months ago by Michael Love ♦ 24k
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Circumventing statistical non-significance on a triple interaction using edgeR
rnaseq edger interactions makecontrasts written 12 months ago by David Rengel • 70 • updated 12 months ago by Aaron Lun • 24k
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Interactions and contrasts for DE analysis in ballgown
rnaseq R interactions de ballgown written 12 months ago by khill33 • 0 • updated 12 months ago by James W. MacDonald ♦ 50k
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Trying to simplify Interaction analysis with edger, and propably failing to do so?
rnaseq edger interactions differential gene expression multiple factor design written 14 months ago by David Rengel • 70
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Using Effect Coding or Orthogonal Coding instead of dummy coding in DESeq2?
deseq2 interactions multiple factor design orthogonal coding effect coding written 19 months ago by vlaufer • 0 • updated 19 months ago by Peter Langfelder • 2.1k
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stimulation effects between wild-type and knockout cells using deseq
deseq2 interactions multiple factor design design matrix written 3.6 years ago by Assa Yeroslaviz • 1.4k • updated 19 months ago by Michael Love ♦ 24k
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Interaction with DESeq2 via DiffBind
diffbind deseq2 interactions written 20 months ago by rbronste • 60 • updated 20 months ago by Rory Stark • 2.8k
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Testing three-way interactions in DESeq2
rnaseq deseq2 interactions rna-seq written 20 months ago by red_bricks • 20 • updated 20 months ago by Michael Love ♦ 24k
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Differential expression analysis desgin
limma edger deseq2 differential expression interactions written 20 months ago by kendralec • 10 • updated 20 months ago by Gordon Smyth ♦ 37k
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DESEq2 contrast statement syntax and design statement question
deseq2 interactions contrast written 22 months ago by grashow • 0 • updated 22 months ago by Michael Love ♦ 24k
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DESeq2 lfcShrink with interactions
deseq2 interactions logfoldchange written 23 months ago by rrcutler • 50 • updated 23 months ago by Michael Love ♦ 24k
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Limma: Contrasts with interaction term
limma interactions multiple factor design continuous term written 2.3 years ago by huma • 0 • updated 2.3 years ago by Aaron Lun • 24k
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[Limma] Testing continuous variable with interaction
limma voom interactions confounding continuous written 2.8 years ago by lanhuong • 0
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DESeq2 3-fatcor design and different interaction terms
rnaseq deseq2 bioconductor interactions multifactorial design written 2.9 years ago by c.evang • 0 • updated 2.9 years ago by Michael Love ♦ 24k
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Seeking confirmation on manually setting contrasts for a 3-factor design in DESeq2 with multiple interaction terms
deseq2 design and contrast matrix interactions contrast multiple factor design written 3.2 years ago by piensaglobalmente • 10 • updated 3.2 years ago by Michael Love ♦ 24k
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Interaction terms in DESeq2 contrasts
deseq2 design and contrast matrix interactions contrast written 3.2 years ago by dwzhang.wisc • 20
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edgeR glmLRT and interaction effect: an example
edger interactions rna-seq glmlrt written 3.2 years ago by David Rengel • 70 • updated 3.2 years ago by Gordon Smyth ♦ 37k
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925
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How to make sense of the fold change values in the interaction results object.
deseq2 interactions logfoldchange written 3.2 years ago by colaneri • 30 • updated 3.2 years ago by Michael Love ♦ 24k
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DESeq2 multifactor experiment design
deseq2 interactions contrast lrt multifactor written 3.4 years ago by rclaire • 0
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DESeq2 multiple interaction terms 3-factor design
deseq deseq2 interactions multiple factor design written 3.4 years ago by Stephen Turner • 260 • updated 3.4 years ago by Michael Love ♦ 24k
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Contrast All Interaction Effects in DESeq2 in current version (1.10.1)
deseq2 interactions differential gene expression written 3.6 years ago by marcus.stoiber • 0
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