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76
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1
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DESeq2 multifactor design, interpreting interaction names
deseq2 interactions multifactorial design written 5 days ago by fargo • 0 • updated 5 days ago by Michael Love ♦ 19k
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1
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64
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1
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Circumventing statistical non-significance on a triple interaction using edgeR
rnaseq edger interactions makecontrasts written 7 weeks ago by David Rengel • 70 • updated 7 weeks ago by Aaron Lun • 20k
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56
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1
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Interactions and contrasts for DE analysis in ballgown
rnaseq R interactions de ballgown written 8 weeks ago by khill33 • 0 • updated 8 weeks ago by James W. MacDonald ♦ 47k
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139
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1
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Trying to simplify Interaction analysis with edger, and propably failing to do so?
rnaseq edger interactions differential gene expression multiple factor design written 4 months ago by David Rengel • 70
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1
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204
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1
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Using Effect Coding or Orthogonal Coding instead of dummy coding in DESeq2?
deseq2 interactions multiple factor design orthogonal coding effect coding written 8 months ago by vlaufer • 0 • updated 8 months ago by Peter Langfelder • 1.5k
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2
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571
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2
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stimulation effects between wild-type and knockout cells using deseq
deseq2 interactions multiple factor design design matrix written 2.8 years ago by Assa Yeroslaviz • 1.4k • updated 9 months ago by Michael Love ♦ 19k
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1
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205
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1
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Interaction with DESeq2 via DiffBind
diffbind deseq2 interactions written 9 months ago by rbronste • 60 • updated 9 months ago by Rory Stark • 2.5k
5
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1
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303
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1
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Testing three-way interactions in DESeq2
rnaseq deseq2 interactions rna-seq written 10 months ago by red_bricks • 20 • updated 10 months ago by Michael Love ♦ 19k
5
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1
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289
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Differential expression analysis desgin
limma edger deseq2 differential expression interactions written 10 months ago by kendralec • 10 • updated 10 months ago by Gordon Smyth ♦ 34k
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511
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1
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DESEq2 contrast statement syntax and design statement question
deseq2 interactions contrast written 12 months ago by grashow • 0 • updated 12 months ago by Michael Love ♦ 19k
3
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1
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669
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1
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DESeq2 lfcShrink with interactions
deseq2 interactions logfoldchange written 12 months ago by rrcutler • 50 • updated 12 months ago by Michael Love ♦ 19k
2
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1
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494
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1
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Limma: Contrasts with interaction term
limma interactions multiple factor design continuous term written 17 months ago by huma • 0 • updated 17 months ago by Aaron Lun • 20k
2
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2
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433
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2
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[Limma] Testing continuous variable with interaction
limma voom interactions confounding continuous written 23 months ago by lanhuong • 0
2
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2
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565
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2
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DESeq2 3-fatcor design and different interaction terms
rnaseq deseq2 bioconductor interactions multifactorial design written 2.0 years ago by c.evang • 0 • updated 2.0 years ago by Michael Love ♦ 19k
2
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1
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555
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1
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Seeking confirmation on manually setting contrasts for a 3-factor design in DESeq2 with multiple interaction terms
deseq2 design and contrast matrix interactions contrast multiple factor design written 2.3 years ago by piensaglobalmente • 10 • updated 2.3 years ago by Michael Love ♦ 19k
2
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2
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1.5k
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2
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Interaction terms in DESeq2 contrasts
deseq2 design and contrast matrix interactions contrast written 2.4 years ago by dwzhang.wisc • 20
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1
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1
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edgeR glmLRT and interaction effect: an example
edger interactions rna-seq glmlrt written 2.4 years ago by David Rengel • 70 • updated 2.4 years ago by Gordon Smyth ♦ 34k
2
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1
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682
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1
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How to make sense of the fold change values in the interaction results object.
deseq2 interactions logfoldchange written 2.4 years ago by colaneri • 30 • updated 2.4 years ago by Michael Love ♦ 19k
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3
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1.6k
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3
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DESeq2 multifactor experiment design
deseq2 interactions contrast lrt multifactor written 2.6 years ago by rclaire • 0
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1
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2.7k
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7 follow
1
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DESeq2 multiple interaction terms 3-factor design
deseq deseq2 interactions multiple factor design written 2.6 years ago by Stephen Turner • 260 • updated 2.6 years ago by Michael Love ♦ 19k
1
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1
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850
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1
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Contrast All Interaction Effects in DESeq2 in current version (1.10.1)
deseq2 interactions differential gene expression written 2.8 years ago by marcus.stoiber • 0
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0
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351
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0
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R package for molecule interactions?
R interactions package function written 2.8 years ago by amyfm • 0
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1
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2.4k
views
1
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Calculating contrasts for continuous variable anad interaction effect in Limma
design and contrast matrix interactions limma design matrix continuous written 2.8 years ago by jaison75 • 0 • updated 2.8 years ago by Aaron Lun • 20k
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787
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DESeq2 design issues - specifically understanding contrasts & interactions from page 23-25 of the DESeq2 manual
deseq2 design and contrast matrix interactions contrast written 2.9 years ago by moldach • 10 • updated 2.9 years ago by Michael Love ♦ 19k
2
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1.6k
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1
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confusing on the interaction and betaprior in DESeq2.
deseq2 interactions contrast written 3.2 years ago by shao • 80
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