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0
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1
answer
66
views
1
answer
Splitting a dataset and control sample batch
deseq2 interactions batch effect correction grouping variable written 19 days ago by mat.lesche • 40 • updated 14 days ago by Michael Love ♦ 19k
0
votes
1
answer
117
views
1
answer
RNA-seq time course experiment - DESEq2 Contrasts
deseq2 interactions contrast rna-seq written 27 days ago by Maithê Barros • 0 • updated 27 days ago by Michael Love ♦ 19k
0
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1
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132
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1
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DESeq2 multifactor design, interpreting interaction names
deseq2 interactions multifactorial design written 9 weeks ago by fargo • 0 • updated 9 weeks ago by Michael Love ♦ 19k
0
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1
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89
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1
answer
Circumventing statistical non-significance on a triple interaction using edgeR
rnaseq edger interactions makecontrasts written 3 months ago by David Rengel • 70 • updated 3 months ago by Aaron Lun • 21k
0
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1
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80
views
1
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Interactions and contrasts for DE analysis in ballgown
rnaseq R interactions de ballgown written 3 months ago by khill33 • 0 • updated 3 months ago by James W. MacDonald ♦ 48k
1
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1
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170
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1
answer
Trying to simplify Interaction analysis with edger, and propably failing to do so?
rnaseq edger interactions differential gene expression multiple factor design written 6 months ago by David Rengel • 70
0
votes
1
answer
230
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1
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Using Effect Coding or Orthogonal Coding instead of dummy coding in DESeq2?
deseq2 interactions multiple factor design orthogonal coding effect coding written 10 months ago by vlaufer • 0 • updated 10 months ago by Peter Langfelder • 1.6k
0
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2
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595
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2
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stimulation effects between wild-type and knockout cells using deseq
deseq2 interactions multiple factor design design matrix written 2.9 years ago by Assa Yeroslaviz • 1.4k • updated 11 months ago by Michael Love ♦ 19k
2
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1
answer
236
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1
answer
Interaction with DESeq2 via DiffBind
diffbind deseq2 interactions written 11 months ago by rbronste • 60 • updated 11 months ago by Rory Stark • 2.6k
5
votes
1
answer
354
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1
answer
Testing three-way interactions in DESeq2
rnaseq deseq2 interactions rna-seq written 12 months ago by red_bricks • 20 • updated 12 months ago by Michael Love ♦ 19k
5
votes
1
answer
323
views
1
answer
Differential expression analysis desgin
limma edger deseq2 differential expression interactions written 12 months ago by kendralec • 10 • updated 12 months ago by Gordon Smyth ♦ 35k
0
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1
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545
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1
answer
DESEq2 contrast statement syntax and design statement question
deseq2 interactions contrast written 14 months ago by grashow • 0 • updated 14 months ago by Michael Love ♦ 19k
3
votes
1
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736
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1
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DESeq2 lfcShrink with interactions
deseq2 interactions logfoldchange written 14 months ago by rrcutler • 50 • updated 14 months ago by Michael Love ♦ 19k
2
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1
answer
585
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1
answer
Limma: Contrasts with interaction term
limma interactions multiple factor design continuous term written 19 months ago by huma • 0 • updated 19 months ago by Aaron Lun • 21k
2
votes
2
answers
467
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2
answers
[Limma] Testing continuous variable with interaction
limma voom interactions confounding continuous written 2.1 years ago by lanhuong • 0
2
votes
2
answers
626
views
2
answers
DESeq2 3-fatcor design and different interaction terms
rnaseq deseq2 bioconductor interactions multifactorial design written 2.2 years ago by c.evang • 0 • updated 2.2 years ago by Michael Love ♦ 19k
2
votes
1
answer
585
views
1
answer
Seeking confirmation on manually setting contrasts for a 3-factor design in DESeq2 with multiple interaction terms
deseq2 design and contrast matrix interactions contrast multiple factor design written 2.5 years ago by piensaglobalmente • 10 • updated 2.5 years ago by Michael Love ♦ 19k
2
votes
2
answers
1.6k
views
2
answers
Interaction terms in DESeq2 contrasts
deseq2 design and contrast matrix interactions contrast written 2.5 years ago by dwzhang.wisc • 20
3
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1
answer
1.4k
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1
answer
edgeR glmLRT and interaction effect: an example
edger interactions rna-seq glmlrt written 2.6 years ago by David Rengel • 70 • updated 2.6 years ago by Gordon Smyth ♦ 35k
2
votes
1
answer
727
views
1
answer
How to make sense of the fold change values in the interaction results object.
deseq2 interactions logfoldchange written 2.6 years ago by colaneri • 30 • updated 2.6 years ago by Michael Love ♦ 19k
0
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3
answers
1.7k
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3
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DESeq2 multifactor experiment design
deseq2 interactions contrast lrt multifactor written 2.7 years ago by rclaire • 0
9
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1
answer
2.9k
views
7 follow
1
answer
DESeq2 multiple interaction terms 3-factor design
deseq deseq2 interactions multiple factor design written 2.8 years ago by Stephen Turner • 260 • updated 2.8 years ago by Michael Love ♦ 19k
1
vote
1
answer
918
views
1
answer
Contrast All Interaction Effects in DESeq2 in current version (1.10.1)
deseq2 interactions differential gene expression written 3.0 years ago by marcus.stoiber • 0
0
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0
answers
382
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0
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R package for molecule interactions?
R interactions package function written 3.0 years ago by amyfm • 0
2
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1
answer
2.6k
views
1
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Calculating contrasts for continuous variable anad interaction effect in Limma
design and contrast matrix interactions limma design matrix continuous written 3.0 years ago by jaison75 • 0 • updated 3.0 years ago by Aaron Lun • 21k
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