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1
vote
1
answer
98
views
1
answer
Trying to simplify Interaction analysis with edger, and propably failing to do so?
rnaseq edger interactions differential gene expression multiple factor design written 6 weeks ago by David Rengel • 70
0
votes
1
answer
160
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1
answer
Using Effect Coding or Orthogonal Coding instead of dummy coding in DESeq2?
deseq2 interactions multiple factor design orthogonal coding effect coding written 5 months ago by vlaufer • 0 • updated 5 months ago by Peter Langfelder • 1.4k
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2
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524
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2
answers
stimulation effects between wild-type and knockout cells using deseq
deseq2 interactions multiple factor design design matrix written 2.5 years ago by Assa Yeroslaviz • 1.4k • updated 6 months ago by Michael Love ♦ 17k
2
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1
answer
180
views
1
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Interaction with DESeq2 via DiffBind
diffbind deseq2 interactions written 7 months ago by rbronste • 60 • updated 6 months ago by Rory Stark • 2.4k
5
votes
1
answer
226
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1
answer
Testing three-way interactions in DESeq2
rnaseq deseq2 interactions rna-seq written 7 months ago by red_bricks • 20 • updated 7 months ago by Michael Love ♦ 17k
5
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1
answer
252
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1
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Differential expression analysis desgin
limma edger deseq2 differential expression interactions written 7 months ago by kendralec • 10 • updated 7 months ago by Gordon Smyth ♦ 33k
0
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1
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463
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1
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DESEq2 contrast statement syntax and design statement question
deseq2 interactions contrast written 9 months ago by grashow • 0 • updated 9 months ago by Michael Love ♦ 17k
3
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1
answer
552
views
1
answer
DESeq2 lfcShrink with interactions
deseq2 interactions logfoldchange written 9 months ago by rrcutler • 50 • updated 9 months ago by Michael Love ♦ 17k
2
votes
1
answer
391
views
1
answer
Limma: Contrasts with interaction term
limma interactions multiple factor design continuous term written 14 months ago by huma • 0 • updated 14 months ago by Aaron Lun • 19k
2
votes
2
answers
385
views
2
answers
[Limma] Testing continuous variable with interaction
limma voom interactions confounding continuous written 20 months ago by lanhuong • 0
2
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2
answers
487
views
2
answers
DESeq2 3-fatcor design and different interaction terms
rnaseq deseq2 bioconductor interactions multifactorial design written 21 months ago by c.evang • 0 • updated 21 months ago by Michael Love ♦ 17k
2
votes
1
answer
499
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1
answer
Seeking confirmation on manually setting contrasts for a 3-factor design in DESeq2 with multiple interaction terms
deseq2 design and contrast matrix interactions contrast multiple factor design written 2.1 years ago by piensaglobalmente • 10 • updated 2.1 years ago by Michael Love ♦ 17k
2
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2
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1.3k
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2
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Interaction terms in DESeq2 contrasts
deseq2 design and contrast matrix interactions contrast written 2.1 years ago by dwzhang.wisc • 20
3
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1
answer
1.1k
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1
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edgeR glmLRT and interaction effect: an example
edger interactions rna-seq glmlrt written 2.2 years ago by David Rengel • 70 • updated 2.2 years ago by Gordon Smyth ♦ 33k
2
votes
1
answer
605
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1
answer
How to make sense of the fold change values in the interaction results object.
deseq2 interactions logfoldchange written 2.2 years ago by colaneri • 30 • updated 2.2 years ago by Michael Love ♦ 17k
0
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3
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1.4k
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3
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DESeq2 multifactor experiment design
deseq2 interactions contrast lrt multifactor written 2.3 years ago by rclaire • 0
9
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1
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2.5k
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7 follow
1
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DESeq2 multiple interaction terms 3-factor design
deseq deseq2 interactions multiple factor design written 2.4 years ago by Stephen Turner • 260 • updated 2.4 years ago by Michael Love ♦ 17k
1
vote
1
answer
763
views
1
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Contrast All Interaction Effects in DESeq2 in current version (1.10.1)
deseq2 interactions differential gene expression written 2.6 years ago by marcus.stoiber • 0
0
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0
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332
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0
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R package for molecule interactions?
R interactions package function written 2.6 years ago by amyfm • 0
2
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1
answer
2.3k
views
1
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Calculating contrasts for continuous variable anad interaction effect in Limma
design and contrast matrix interactions limma design matrix continuous written 2.6 years ago by jaison75 • 0 • updated 2.6 years ago by Aaron Lun • 19k
0
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1
answer
709
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1
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DESeq2 design issues - specifically understanding contrasts & interactions from page 23-25 of the DESeq2 manual
deseq2 design and contrast matrix interactions contrast written 2.6 years ago by moldach • 10 • updated 2.6 years ago by Michael Love ♦ 17k
2
votes
1
answer
1.5k
views
1
answer
confusing on the interaction and betaprior in DESeq2.
deseq2 interactions contrast written 2.9 years ago by shao • 80
0
votes
1
answer
559
views
1
answer
Interaction of fixed effects in DESeq2
deseq2 interactions written 3.0 years ago by Silva • 0 • updated 3.0 years ago by Michael Love ♦ 17k
3
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1
answer
1.3k
views
1
answer
RNAseq analysis using edgeR - specifying and testing full factorial 2x2x4 model, main effects and interactions.
edger interactions multiple factor design written 3.1 years ago by v.oostra • 0 • updated 3.1 years ago by Aaron Lun • 19k
1
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0
answers
970
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0
answers
Job: Bioinformatics / Biostatistics in genetic interaction analysis
genetics jobs job interactions high-throughput screening image analysis written 3.1 years ago by Bernd Fischer • 540
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