jaspar Posts

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motifDb PFM vs JASPAR database PFM: conversion to PWM

motifdb jaspar pwm pfm written 12 months ago by chrisclarkson100 • 30 • updated 11 months ago by Bioconductor Community ♦♦ 0

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186

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Plotting motif enrichment vs background - Jaspar core vertebrates

jaspar meme pwm motifs motif analysis written 12 months ago by rbronste • 60

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trouble accessing JASPAR2018.sqlite

rsqlite jaspar written 21 months ago by m.d.shapiro • 0 • updated 21 months ago by James W. MacDonald ♦ 52k

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Error: unable to find an inherited method for function searchSeq for signature matrix

tfbstools jaspar pwm written 2.2 years ago by chrisclarkson100 • 30 • updated 2.2 years ago by Ge Tan • 20

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TF ANALYSIS USING JASPAR

transcription jaspar written 2.6 years ago by nia • 10 • updated 2.6 years ago by James W. MacDonald ♦ 52k

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Identifying TF binding sites (Motifdb + TxDb.Hsapiens.UCSC.hg19.knownGene)

motifdb jaspar transcription factor binding site written 4.1 years ago by Lisa Hopcroft • 40

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TFBSTools access to JASPAR2014 via getMatrixSet()

tfbstools jaspar written 4.2 years ago by JasonLouisStein • 0 • updated 4.1 years ago by Ge Tan • 20

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841

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Problem with rGADEM & MotIV - one matrix consensus after GADEM() and one plot enrichment motif

chipseq rgadem motiv jaspar written 4.6 years ago by w.jarassier • 0 • updated 4.5 years ago by emercier • 0