0
votes
1
answer
58
views
1
answer
MEDIPS: case study with different replicate numbers of control and case
medips written 7 days ago by fmhsu01140 • updated 7 days ago by Lukas Chavez460
0
votes
1
answer
48
views
1
answer
Insertion size when using 'paired' in MEDIPS.createSet()
pair-end reads medips medip-seq R written 6 weeks ago by stb0 • updated 6 weeks ago by Lukas Chavez460
0
votes
1
answer
95
views
1
answer
0
votes
1
answer
59
views
1
answer
0
votes
1
answer
117
views
1
answer
MEDIPS - do reads without CG's get filtered out prior to analysis?
medips written 3 months ago by chu_shirley0 • updated 3 months ago by Lukas Chavez460
0
votes
1
answer
56
views
1
answer
How does the 'paired' argument works in MeDIPS 1.23.2
pair-end reads medips medip-seq R written 4 months ago by stb0 • updated 4 months ago by Lukas Chavez460
0
votes
1
answer
99
views
1
answer
Gene Symbol Annotation
medips written 5 months ago by peter.mcerlean0 • updated 5 months ago by Lukas Chavez460
0
votes
1
answer
133
views
1
answer
MeDIPS: warning when using "ttest" settings in MEDIPS.meth
R medip-seq medips written 5 months ago by stb0 • updated 5 months ago by Lukas Chavez460
0
votes
1
answer
83
views
1
answer
TMM Normalization within MEDIPS ups some zero counts, is this normal?
medips written 5 months ago by jenniferlneary0 • updated 5 months ago by Lukas Chavez460
1
vote
1
answer
109
views
1
answer
MeDIPS and use of the 'bwa' parameter
R bwa medip-seq medips written 5 months ago by stb0 • updated 5 months ago by Lukas Chavez460
1
vote
2
answers
113
views
2
answers
Alternative methylation contexts with MEDIPS?
medips written 5 months ago by Chris Fields60 • updated 5 months ago by Matthias Lienhard70
0
votes
4
answers
156
views
4
answers
MEDIPS - input
medips input written 7 months ago by Gilgi10
0
votes
0
answers
128
views
0
answers
0
votes
1
answer
168
views
1
answer
MeQA and MEDIPS
medips meqa bioconductor written 8 months ago by manish.kumar0 • updated 8 months ago by Lukas Chavez460
0
votes
1
answer
238
views
1
answer
0
votes
2
answers
216
views
2
answers
0
votes
1
answer
305
views
1
answer
Error in MEDIPS.calibrationCurve looking for different methylation profiles
medips R written 11 months ago by pertille0 • updated 11 months ago by Lukas Chavez460
0
votes
1
answer
195
views
1
answer
How to do FDR p.adj manually on "mr.edgeR object" from MEDIPS package?
R medips edger written 11 months ago by pertille0 • updated 11 months ago by Lukas Chavez460
2
votes
1
answer
177
views
1
answer
How createSet from reduced "paire-ed" sequencing on MeDIPS?
medips R input files written 11 months ago by pertille0 • updated 11 months ago by Lukas Chavez460
0
votes
1
answer
265
views
1
answer
MEDIPS stable version problem
medips written 13 months ago by chengyuanzhi19860 • updated 12 months ago by Lukas Chavez460
2
votes
1
answer
222
views
1
answer
Normalizing Depth Coverage between samples MEDIPS
"r" medips edger normalization depth written 14 months ago by pertille0 • updated 14 months ago by Aaron Lun13k
2
votes
3
answers
442
views
3
answers
0
votes
1
answer
253
views
1
answer
New to R: How to use your own data for Bioconductor Packages
rsamtools medips written 16 months ago by hseepany0 • updated 16 months ago by Dan Tenenbaum ♦♦ 8.1k
0
votes
1
answer
230
views
1
answer
MEDIPS test data lack of 4 files
medips written 18 months ago by yanzhangusa0 • updated 18 months ago by Lukas Chavez460
1
vote
1
answer
425
views
1
answer
MEDIPS vs MACS: why does MEDIPS generate more conservative p-values
medips p-value macs written 19 months ago by tptacek30500 • updated 19 months ago by Lukas Chavez460
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