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Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va by davidhillis • 0

Thank you so much for your help!

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va by James W. MacDonald 62k

You cannot use `AllVariants` for a `GRangesList`. The `GRangesList` that you are providing contains only the intronic ranges, whereas `AllV…

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va by davidhillis • 0

Thank you very much! I apologize for my ignorance, however I would like to clarify the problem/solution. The problem specifically occurs w…

Comment: Representation of self-loops and the calculation of degrees by Vincent J. Carey, Jr. 6.6k

Thanks for this. I think the package and this condition should be made consistent with igraph. Can you provide a PR?

Answer: Help understanding dispersion values and why so many genes change significance a by Michael Love 39k

Can you make some `plotCounts` for those genes with high mean and high dispersion? The dispersion has a maximum value based on sample size …

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Adjustment of covariates in 450k data using Limma

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