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0
votes
2
answers
28
views
2
answers
What does component or SCX classification in iTRAQ/TMT experiment represent?
proteomics written 11 days ago by larryhunt • 0 • updated 11 days ago by Laurent Gatto ♦ 1.0k
1
vote
0
answers
72
views
0
answers
Define batch effect variables before removing them or getting rid of hidden surrogate variables
proteomics sva batch effect correction written 23 days ago by Sebastian Hesse • 10
2
votes
1
answer
136
views
1
answer
msmsTests, NA values in test.results output
proteomics fdr msmstests written 7 weeks ago by laural710 • 0 • updated 7 weeks ago by Laurent Gatto ♦ 1.0k
3
votes
2
answers
118
views
2
answers
Writing a loop to clean up protein names
proteomics R transcriptomics loops batch-processing written 8 weeks ago by laural710 • 0 • updated 8 weeks ago by Sebastian Gibb • 80
1
vote
1
answer
193
views
1
answer
Limma: technical and biological replicates in proteomics data
proteomics limma replicates written 4 months ago by ivansilbern • 0 • updated 4 months ago by Aaron Lun • 21k
0
votes
0
answers
100
views
0
answers
Extracting p-value table in Prostar
proteomics prostar written 5 months ago by laural710 • 0
1
vote
1
answer
158
views
1
answer
Running GO analysis via Prostar
proteomics annotationforge rforproteomics prostar written 6 months ago by lolli.langan • 20 • updated 6 months ago by Samuel Wieczorek • 0
1
vote
2
answers
195
views
2
answers
Deseq2 with replicate mean and variance information
proteomics deseq deseq2 differential analysis written 8 months ago by blehtine • 0
0
votes
1
answer
287
views
1
answer
Cannot install and load MSstats package
proteomics massspectrometry msstats written 8 months ago by zz298 • 0 • updated 8 months ago by Laurent Gatto ♦ 1.0k
0
votes
0
answers
203
views
0
answers
News: Computational Mass Spectrometry Track at ISMB 2018
proteomics news ismb written 8 months ago by mnchoi67 • 40
1
vote
1
answer
193
views
1
answer
Adding annotation to MSnSet
proteomics bioconductor msnset written 9 months ago by lolli.langan • 20 • updated 9 months ago by Laurent Gatto ♦ 1.0k
3
votes
2
answers
330
views
2
answers
DEP: Grouping Samples for missing value imputation
proteomics rforproteomics missing value imputation dep written 12 months ago by alex.gos90 • 10
0
votes
1
answer
236
views
1
answer
Trouble using addMarkers from pRoloc on my own dataset
proteomics msnset proloc written 10 months ago by moldach • 10
2
votes
0
answers
230
views
0
answers
News: LAST CHANCE: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
proteomics news training course msstats written 10 months ago by mnchoi67 • 40
0
votes
2
answers
346
views
2
answers
Getting data into (and out of) the MSnSet object
proteomics msnbase msnset readmsnset msmstests written 10 months ago by moldach • 10
2
votes
1
answer
329
views
1
answer
Protein differential Expression analysis
proteomics differential expression written 11 months ago by cardin.julie • 0 • updated 11 months ago by Laurent Gatto ♦ 1.0k
1
vote
0
answers
876
views
0
answers
News: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
proteomics news training course bioconductor msstats written 11 months ago by mnchoi67 • 40
1
vote
1
answer
690
views
1
answer
Job: junior level position in proteomics/data science
proteomics job docker git machine learning written 14 months ago by petyuk • 70 • updated 11 months ago by karimse07 • 0
2
votes
0
answers
327
views
0
answers
mapping protein PTM data
proteomics written 13 months ago by petyuk • 70
5
votes
2
answers
361
views
2
answers
Strong upwards correlation between log fold change and average log expression in MD plot of Limma
proteomics limma written 13 months ago by gil.hornung • 0 • updated 13 months ago by Gordon Smyth ♦ 35k
3
votes
1
answer
395
views
1
answer
Enrichment Analysis for Shot-gun proteomics data using the ReactomePA package: problem with identities loss
proteomics reactome reactome.db reactomepa uniprot accessions written 13 months ago by Miguel.Cosenza • 10 • updated 13 months ago by willem.ligtenberg • 150
1
vote
0
answers
343
views
0
answers
Job: PhD opportunity in St Andrews (Proteomic and Genomic analysis of Oesophageal Cancers)
proteomics job cancer genomics written 14 months ago by Andy Lynch • 100
1
vote
0
answers
427
views
0
answers
Job: Post-doctoral mass spectrometry and proteomics bioinformatician (updated)
proteomics job bioinformatics mass spectrometry written 18 months ago by Laurent Gatto ♦ 1.0k
4
votes
1
answer
455
views
1
answer
Limma is doing the right way to calculate the fold change?
proteomics limma written 18 months ago by Bioinformatics • 30 • updated 18 months ago by Laurent Gatto ♦ 1.0k
0
votes
0
answers
420
views
0
answers
News: May Institute Computation and statistics for mass spectrometry and proteomics
proteomics news biostatistics mass spectrometry written 22 months ago by Laurent Gatto ♦ 1.0k
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