Showing: proteomics • reset
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Writing a loop through multiple fasta files and named files (is it possible with MSGFplus?)
proteomics R msgf+ written 7 days ago by laural710 • 0 • updated 7 days ago by Martin Morgan ♦♦ 23k
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DEP package - Understanding the results table
proteomics logfc dep written 12 days ago by rina • 0
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DEP: TMT analysis from MaxQuant output
proteomics dep tmt written 4 weeks ago by dparrine • 0
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Job: Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics job software genomics transcriptomics written 27 days ago by Laurent Gatto ♦ 1.2k
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News: Protemics with R and Bioconductor course in Berlin
proteomics news R written 5 weeks ago by info • 0
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Proteomics data analysis with DEP no replicates
proteomics limma statistics dep written 8 weeks ago by tatabox • 0
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Getting data into (and out of) the MSnSet object
proteomics msnbase msnset readmsnset msmstests written 21 months ago by moldach • 20 • updated 9 weeks ago by sutturka • 0
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Clarification of results tables in DEP
proteomics dep written 3 months ago by António Miguel de Jesus Domingues • 470 • updated 12 weeks ago by arne.smits • 60
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Interpreting Fold Change Calculation in Limma to Non-Statisticians: Sanity Check
proteomics limma written 5 months ago by JMallory • 0 • updated 4 months ago by LKal • 0
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1
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130
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Where can I get functional bins for Arabidopsis thaliana genome (AGIs)
proteomics R rna-seq written 6 months ago by Wuschel • 10 • updated 6 months ago by Matthew McCormack • 180
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How to integrate and visualize RNASeq / Proteomics data for metabolomics pathways?
metabolomics proteomics R kegg transcriptomics written 6 months ago by Wuschel • 10
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Comparative proteome analysis of two different species
proteomics lc-ms/ms written 7 months ago by pdaltron • 0 • updated 7 months ago by Laurent Gatto ♦ 1.2k
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Job: Full time and permanent research logistician in Bioinformatics
proteomics job bioinformatician transcriptomics written 7 months ago by Laurent Gatto ♦ 1.2k
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140
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Errors installing "shinyTANDEM" package
proteomics software error written 7 months ago by pdaltron • 0 • updated 7 months ago by Laurent Gatto ♦ 1.2k
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Errors installing mzR package
proteomics error written 7 months ago by pdaltron • 0 • updated 7 months ago by Laurent Gatto ♦ 1.2k
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News: Bioinformatics Summer School - July 2019 - UCLouvain (Belgium)
rnaseq proteomics deseq2 news workshop transcriptomics written 8 months ago by Laurent Gatto ♦ 1.2k
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How to convert a xlsx data file to MSnSet format?
proteomics msnbase msnid msmstests lc-ms/ms written 8 months ago by fgol • 10 • updated 8 months ago by Laurent Gatto ♦ 1.2k
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What does component or SCX classification in iTRAQ/TMT experiment represent?
proteomics written 10 months ago by larryhunt • 0 • updated 10 months ago by Laurent Gatto ♦ 1.2k
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Define batch effect variables before removing them or getting rid of hidden surrogate variables
proteomics sva batch effect correction written 11 months ago by Sebastian Hesse • 30
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374
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msmsTests, NA values in test.results output
proteomics fdr msmstests written 12 months ago by laural710 • 0 • updated 12 months ago by Laurent Gatto ♦ 1.2k
3
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306
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Writing a loop to clean up protein names
proteomics R transcriptomics loops batch-processing written 12 months ago by laural710 • 0 • updated 12 months ago by Sebastian Gibb • 80
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1
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Limma: technical and biological replicates in proteomics data
proteomics limma replicates written 15 months ago by ivansilbern • 0 • updated 15 months ago by Aaron Lun • 25k
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Extracting p-value table in Prostar
proteomics prostar written 16 months ago by laural710 • 0
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1
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313
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1
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Running GO analysis via Prostar
proteomics annotationforge rforproteomics prostar written 17 months ago by lolli.langan • 20 • updated 16 months ago by Samuel Wieczorek • 0
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2
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379
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Deseq2 with replicate mean and variance information
proteomics deseq deseq2 differential analysis written 18 months ago by blehtine • 0
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